Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0248.Seq
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative...    30   1.4  
At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2) M...    30   1.8  
At1g27190.1 68414.m03312 leucine-rich repeat transmembrane prote...    29   2.4  
At2g39300.1 68415.m04825 expressed protein ; expression supporte...    29   3.2  
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P...    29   3.2  
At4g35440.1 68417.m05035 voltage-gated chloride channel family p...    29   4.2  
At1g69280.1 68414.m07943 expressed protein                             29   4.2  
At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1) i...    29   4.2  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    28   5.6  
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al...    28   5.6  
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi...    28   5.6  
At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containi...    28   7.4  
At3g14390.1 68416.m01820 diaminopimelate decarboxylase, putative...    28   7.4  
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea...    27   9.8  

>At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 489

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 571 YISKASRLLVRLESYDEAVDNLRREIGFHLEANN 672
           Y+    ++   LE+Y EA++ +R  IG+ ++ANN
Sbjct: 100 YLYSKPQITRNLEAYKEALEGVRSVIGYAIKANN 133


>At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; similar to
           SWISS-PROT:SPP03819 Glutathione-regulated
           potassium-efflux system protein kefC (K(+)/H(+)
           antiporter) [Escherichia coli]
          Length = 627

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 720 KLYQHDGHAQSAHGRQVIRFKMEPDLATQIIDSLVVAFETNQQSGRLAY--VLDALMLAA 547
           ++ Q  G + S HGR      +  DLA  ++  L+     N   G + +  + +AL LAA
Sbjct: 150 QVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAA 209

Query: 546 L 544
           +
Sbjct: 210 I 210


>At1g27190.1 68414.m03312 leucine-rich repeat transmembrane protein
           kinase, putative similar to CLV1 receptor kinase
           GB:AAB58929 GI:2160756 from [Arabidopsis thaliana]
          Length = 601

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 STRLKLWSKPCSSARSSAMLTSCSTWH 401
           S+RL  WS P SSA S   LT  S W+
Sbjct: 42  SSRLSSWSFPNSSASSICKLTGVSCWN 68


>At2g39300.1 68415.m04825 expressed protein ; expression supported
           by MPSS
          Length = 768

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 290 SESYKKNRSFFHAAKAL--EQALLVGKELSNADELFNLALEASSLYQQH 430
           SE  KK  S  H  K L  EQ  LVG ELS   E+ ++ LEA SL +++
Sbjct: 494 SEEIKKQPSE-HVDKKLQMEQLRLVGVELSLRKEVESMKLEAESLRREN 541


>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 599

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 45  ISLLPESVV-CLAPLRL*FFTVTMSTKIEEALEHIKT-AQKYLKTSVLRWKPDFDSAADE 218
           + L P S+  CL   +  F +V+ S  I   +E   + +++Y    VLRW P+ +    +
Sbjct: 6   VLLKPSSLTTCLTRAKAFFSSVSQSRSISHQMEMGPSDSERYCYDPVLRWNPEVEDYFTK 65

Query: 219 FCQAAQCYRIART*SKPGTATTALQRAIRRT 311
                   RI++  ++P + +      ++ T
Sbjct: 66  AYGPDHFARISKALTRPSSYSCIRVNTVKTT 96


>At4g35440.1 68417.m05035 voltage-gated chloride channel family
           protein contains Pfam profile PF00654: Voltage gated
           chloride channel
          Length = 710

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 54  LPESVVCLAPLRL*FFTVTMSTKIEEAL 137
           LP+S+     +R  F TV MST +EEAL
Sbjct: 555 LPKSIFVSEAMRTRFATVMMSTSLEEAL 582


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 662 KRITCRP-WADCAWPSCWYNLARG 730
           KR+ C P ++ C WPSC YN + G
Sbjct: 328 KRLKCCPCFSWCRWPSCDYNSSCG 351


>At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1)
           identical to GB:AAD01191 GI:4101473 from [ Arabidopsis
           thaliana]; Monovalent cation:proton antiporter family 2
           (CPA2 family) member, PMID:11500563
          Length = 618

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 720 KLYQHDGHAQSAHGRQVIRFKMEPDLATQIIDSLVVAFETNQQSGRLAY--VLDALMLAA 547
           ++ Q  G + S HGR      +  DLA  ++  L+     N   G + +  + +AL LAA
Sbjct: 142 QVLQERGESTSRHGRASFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAA 201

Query: 546 L 544
           +
Sbjct: 202 V 202


>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
           - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 282 TALQRAIRRTGRSSTRLKLWSKPCSSARSSAMLTSCSTWHWRP 410
           TA ++    +  SS+RL   S PCSS+ SSA +++ ++   +P
Sbjct: 77  TAKEKQRGVSSESSSRLSFSSSPCSSSFSSADISTTASQFEQP 119


>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
           alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
           [Arabidopsis thaliana]; contains Pfam profile PF01055:
           Glycosyl hydrolases family 31; identical to cDNA
           alpha-xylosidase precursor (XYL1) partial cds GI:4163996
          Length = 915

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 732 SPRAKLYQHDGHAQSAHGRQVIRFKMEPDLAT 637
           SPR +LYQ D  A SA     +R+K+ P L T
Sbjct: 626 SPRQELYQWDTVADSARNALGMRYKILPFLYT 657


>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 790

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 613 YDEAVDNLRREI--GFHLEANNLPAVGRLCVAIVLVQLG 723
           Y EA++ +RR +  G  L+    P+V R C    L+QLG
Sbjct: 267 YQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG 305


>At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q9FNS4 PsbB mRNA maturation
           factor Mbb1, chloroplast precursor {Chlamydomonas
           reinhardtii}; contains Pfam profile: PF00515: TPR Domain
          Length = 652

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 481 RAGHTPASRELYQHAADISANESS 552
           + G+T  +RELYQ A  I AN  S
Sbjct: 453 KEGNTTTARELYQRALSIDANTES 476


>At3g14390.1 68416.m01820 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 484

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 571 YISKASRLLVRLESYDEAVDNLRREIGFHLEANN 672
           Y+    ++   LE+Y EA++ +   IG+ ++ANN
Sbjct: 95  YLYSKPQITRNLEAYKEALEGVSSVIGYAIKANN 128


>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to photomorphogenesis repressor PnCOP1
           (GI:11127996) [Ipomoea nil]
          Length = 385

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 111 MSTKIEEALEHIKTAQKYL----KTSVLRWKPDF 200
           +S+ +E   +H+  ++ Y+    K S L+W+PDF
Sbjct: 100 LSSLLESRDDHVTASESYICTPAKLSSLKWRPDF 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,791,058
Number of Sequences: 28952
Number of extensions: 281079
Number of successful extensions: 918
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)