Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0247.Seq
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.21
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.37
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 29 0.49
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.1
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 28 1.5
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 28 1.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 2.0
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 27 2.6
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 2.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 3.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.5
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 3.5
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 27 3.5
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 26 6.0
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 6.0
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.0
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 25 8.0
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 8.0
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +1
Query: 31 NQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYK-NTSTDSFGI---QEED 198
+ + T+SS ++ ++ + S ST T TS ++S+ S + +
Sbjct: 351 SSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSS 410
Query: 199 KVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEP 312
KS SAF + TS RS SH + +S ++P
Sbjct: 411 SSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKP 448
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +1
Query: 34 QTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSP 213
Q + D T+ + N++ +++++ + TSKK KG + + E +++SP
Sbjct: 24 QNEYLDNTSQDSPQNDELAEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQELESP 83
Query: 214 E 216
+
Sbjct: 84 Q 84
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 58 NSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPEE 219
NSS NE +P + +++ K KGK + + + GI +K K P+E
Sbjct: 819 NSSRNGNEAEDIPARD---RKKHKIHDKGKKVNSSKVFEKMGIASMEKYKPPQE 869
>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 120
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 4 KEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFG 183
++ +IP+KN +D +SS K++E K +++K +K + ++ G
Sbjct: 50 EDQVRIPSKNAHPWEDTKSSSGKSDESLDYSYKYYPRGDRSKEPRKAPSAIQYSTFPVKG 109
Query: 184 IQEE 195
+ EE
Sbjct: 110 VSEE 113
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +1
Query: 10 PTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIY---KNTSTDSF 180
P +P + D +S ++ M +K ++++K + + I +NT +SF
Sbjct: 133 PGSMPNTGASSSQDPFTNSQSTEKEDAMYSKDNGFEDRSKPASAWEAIRNRNRNTGNNSF 192
Query: 181 GIQEEDKVKSPEEEALS 231
EED + A S
Sbjct: 193 PFYEEDSSVKSTDSAFS 209
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTK---SISTQEQTKTSKKGKGIYKNTST 171
+KE + + T + + + ++ N+ +NE +K SIS E+TK K K K T
Sbjct: 535 QKEESALGTSDNSDMYEKENTPIHHNESLNQLSKDLGSISLSEETKQEKPSK--LKETVE 592
Query: 172 D---SFGIQEEDKVKSPE 216
S G+Q++ S E
Sbjct: 593 SKRLSTGVQKQSPAASKE 610
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.9 bits (59), Expect = 1.5
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +1
Query: 13 TKIPTKN--QTKIDDQTNSSTKNNEQTT-MPTKSISTQEQTKTSKKGKGIYKNTSTDSFG 183
T +P +N +I + +S K+N + TKS T E+ + S K + + + +
Sbjct: 361 TALPKQNPKSERILEPIIASPKDNTSDKGLLTKSAPTFEELQASITPKPVKTSPNDTALT 420
Query: 184 IQEEDKVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPTESPK 327
+ + K+ E + LS S+ S S +TRK+ EP K
Sbjct: 421 LANAEDNKTFEHQPLSKDTEAPKSQFSSSPTKESTTRKSEVEPPSPSK 468
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/43 (20%), Positives = 23/43 (53%)
Frame = +1
Query: 16 KIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKG 144
++P +NQ+ ++ +S+KN + P ++S+ + + G
Sbjct: 598 RVPPENQSNLEHTITTSSKNTTSSINPLTAVSSNSGQSSGRPG 640
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 193 LPVFQTSPWMYFYIYLCLSSTFSFVPVSK*TLLASLFVRCFSSMNLF 53
L F M+ + + F FVP+ TL+ + FV F+ MN+F
Sbjct: 370 LGCFAIMTGMFIFGWTVQYKVFWFVPLIGTTLVGAGFVMTFNPMNMF 416
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 57 KFIDEKQRTNNDANKVYF-DTGTNENVEERQRYI*KYIHGLVWNTGRGQS*IA*RRSVKR 233
K I+ K + D N + D GT ++ + +Y+ K H V+ TG+G S + SV++
Sbjct: 516 KNINGKHKIRGDINVLLLGDPGTAKS--QFLKYVEKTAHRAVFATGQGASAVGLTASVRK 573
Query: 234 VCVPGDFT 257
+ ++T
Sbjct: 574 DPITNEWT 581
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/90 (23%), Positives = 40/90 (44%)
Frame = +1
Query: 4 KEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFG 183
K+PT+ Q + Q + TK+ + ++P+K S +Q + + + S S
Sbjct: 747 KQPTEGQHARQESLPSQQTTETKHLRKESIPSKQPSGGQQLR-QESLPSQQSSESKQSTQ 805
Query: 184 IQEEDKVKSPEEEALSAFVYPETSRRSKSH 273
Q+ +V+ + +SA E S + SH
Sbjct: 806 HQQPVEVQKSIQSDVSAPKAKEVSEKPVSH 835
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 10 PTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKT 132
PT P N T T +S+ N + +PT S ST T
Sbjct: 604 PTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNST 644
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +1
Query: 4 KEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFG 183
++PT K+ K +++ SST E T S S +E K+ + + T
Sbjct: 297 RKPTLRKKKSIPKKQNES-SSTIQKENTVQQEASSSEEEAVKSLPETQRTTSRIETQEEE 355
Query: 184 IQEEDKVKSPEEE 222
I+EE+ EEE
Sbjct: 356 IKEEEMEGEEEEE 368
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/71 (19%), Positives = 27/71 (38%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSF 180
+K +P+ TK+ + N + + +T +I+ Q + +GK N S +
Sbjct: 764 QKTSKALPSTGITKLSENDNEKAEESNETKGFNTTIAKQNDKSSKSEGKASVANMSALNK 823
Query: 181 GIQEEDKVKSP 213
E P
Sbjct: 824 STNNETSDSKP 834
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 631 SWAPQYKNSCDRSINTIQFL*RYSER 554
S++ YK SC R++ + ++ RY +R
Sbjct: 269 SYSLAYKQSCGRAVKNMVYIPRYDKR 294
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 176 ESVDVFLYIPLPFFDVFVCSCVEIDFVGIVVCSLFF 69
+S V +++P P F + +C C I I+V L +
Sbjct: 627 DSFSVGIFLPQPMFIMLICLCYSIISPLILVFGLIY 662
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 7 EPTKIPTKNQTKIDDQTNSST---KNNEQTTMPTKSISTQ-EQTKTSKKGKGIYKNTSTD 174
EP K+ + Q + + N + K + T + I Q + +KK K K + D
Sbjct: 41 EPKKLVQQQQRLKEKKKNENIIYLKKTMRVTPSEEKIHEMINQKRETKKRKRKQKKKNDD 100
Query: 175 SFGIQEEDKVK 207
+G+ EED ++
Sbjct: 101 DYGVFEEDMLE 111
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 28 KNQTKIDDQTNSSTKNNEQTTMPTKS 105
KN + +DD ++SS+ +E+T + +KS
Sbjct: 148 KNTSDVDDSSDSSSDVDEETLIVSKS 173
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 185 IPNESVDVFLYIPLPFFDVFVC 120
+P + FL+IP P +VF C
Sbjct: 345 LPRAKIGFFLHIPFPSSEVFRC 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,904
Number of Sequences: 5004
Number of extensions: 51739
Number of successful extensions: 182
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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