Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0247.Seq
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531... 30 2.1
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 29 2.7
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 29 3.6
09_02_0417 - 8915604-8916779,8916863-8917270 29 3.6
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 4.8
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 29 4.8
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 29 4.8
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 29 4.8
06_03_0720 - 23858394-23858883,23860318-23860727 28 6.3
08_02_0556 + 18592393-18592580,18592839-18593031,18593110-185934... 28 8.3
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 28 8.3
>02_05_0761 -
31550936-31551020,31551641-31552666,31553083-31553117,
31554921-31555039,31555215-31555331,31556131-31556205,
31556885-31557017
Length = 529
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 286 CKKFNDSWIDVKSPGTQTRLTLLLQAI 206
C+K+N+ W+D SP + + +L++I
Sbjct: 378 CEKYNEEWVDPSSPPVRNQSNTVLESI 404
>03_02_0882 - 12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 29.5 bits (63), Expect = 2.7
Identities = 30/125 (24%), Positives = 48/125 (38%)
Frame = +1
Query: 13 TKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQE 192
TK T +TK T S+ + P S+Q +K + + + T +
Sbjct: 669 TKATTAQKTKSSPGTVSAPTATSRRRTPVAPSSSQPTSKVERSAQPVKNKKETVA---AS 725
Query: 193 EDKVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPTESPKLRK**TVEQLRVLPA 372
+ +K EE+ +TSR +KS A T P K+ K +V L P+
Sbjct: 726 KPAIKGIEEKKTKTAT--KTSRLAKSTPISDEKSSAATRPNLYNKVAKKSSVVPLESKPS 783
Query: 373 KRKVG 387
K+ G
Sbjct: 784 KKATG 788
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +1
Query: 1 EKEPTKIPTKNQ-----TKIDDQTNSS-TKNNEQTTMPTKSISTQEQTKTSKKGKGIYKN 162
E++ TK TK T I D+ +S+ T+ N + KS ++K SKK GI ++
Sbjct: 733 EEKKTKTATKTSRLAKSTPISDEKSSAATRPNLYNKVAKKSSVVPLESKPSKKATGISQS 792
Query: 163 TSTDS 177
TD+
Sbjct: 793 AGTDA 797
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 29.1 bits (62), Expect = 3.6
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Frame = +1
Query: 10 PTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQ 189
P K+ T+ Q + + K E+ P K + TK++ G+G K + + + G +
Sbjct: 40 PKKLKTQPQPAAEADGGAVAKPEEKPHSPVKPKRSSSPTKSNSPGEG--KRSESVAAGAK 97
Query: 190 EEDKVK-SPEE-EALSAFVYPETSRR--SKSH*TFYSTRKARTEPTESPKLRK**TVEQL 357
E K K SP++ + L A ++S K S KA+ +ES ++K + ++
Sbjct: 98 PEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRSPSPTKAKALASESQDIKKPSSPKKT 157
Query: 358 RVLPAKR 378
+ L A +
Sbjct: 158 KALDAPK 164
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +1
Query: 61 SSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPEE 219
SS++++E+ MP K I +E TSK+ K ST S +QE+ +K+PEE
Sbjct: 268 SSSEDSEE--MPGKEIG-EEVCMTSKEAK---VKRSTSSSEMQEDMLIKNPEE 314
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 28.7 bits (61), Expect = 4.8
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Frame = +1
Query: 4 KEPTK-IPTKNQTKIDDQTNSSTKN----NEQTTMPTKSISTQEQTKTSKKGKGIYKNTS 168
K P+K IP++ + K + + S K N + + + E G +K +S
Sbjct: 349 KVPSKYIPSEKKGKTAESCSRSPKRERRVNTMANVGARKMQLSENLLVKTLNDGEHKLSS 408
Query: 169 TDSFGIQEEDKVKS--PEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPTESPKLRK 336
+ + K S P+++ PE S R+ + +F ST P SP LRK
Sbjct: 409 PQLTSFKSKGKCSSISPQQKENDNTHIPEASDRTAARNSFNSTPSPAANP--SPVLRK 464
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 631 SWAPQYKNSCDRSINTIQFL*RYSER*YNTLMKCSFKFLKHSYLLMNLIFIVVSG 467
SWAP N +R ++ + L S + C F+FL+H L +I+++ G
Sbjct: 254 SWAPNTLN--ERMLSLVFGLTNQSNKPKALKSSCKFEFLEHGALTAWMIYMIFHG 306
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 654 LCYFELWVLGHRNIKTVVTEALIQFNSYN 568
LC FE W GHR + T + +A I+F+ ++
Sbjct: 446 LCRFE-WHTGHRELATALFQAQIEFSLFS 473
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 25 TKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDK 201
T+N T + + S++ + + T K + + K K+GK + ST S +E+DK
Sbjct: 33 TRNVTHVPSKNVSTSSSQARKTTVQKPKRKRHRPKVIKEGKATQAHKSTTSEPPKEKDK 91
>06_03_0720 - 23858394-23858883,23860318-23860727
Length = 299
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 25 TKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKG 150
T++ + DD S N + T KSIS +E+ +T +G
Sbjct: 40 TESSLETDDSRRSRPPENPERTAARKSISEEEEEETCDMAEG 81
>08_02_0556 +
18592393-18592580,18592839-18593031,18593110-18593499,
18593576-18593686,18593789-18593867,18594048-18594109,
18594182-18594238,18594498-18594581
Length = 387
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 106 ISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPE 216
I E+T KGKG Y N + + D+VK E
Sbjct: 269 IDVFERTHRHAKGKGQYANKKAEQLAVVYNDRVKEGE 305
>04_04_0411 - 25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +1
Query: 25 TKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKV 204
TK+ +K + + +K+ + S S + T K G N + +E++
Sbjct: 765 TKSASK--SKNDGGSKHKDSKDEAKSSGSNPKGASTPKAADGSKTNGLSTKRKQKEKEGE 822
Query: 205 KSPEEEALSAFVYPETSRRSKSH 273
S EEE +SA + RR K+H
Sbjct: 823 SSEEEEHVSAKISTGKKRRRKAH 845
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,725
Number of Sequences: 37544
Number of extensions: 269114
Number of successful extensions: 704
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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