Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0247.Seq
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064) 36 0.032
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66) 33 0.30
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 32 0.52
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 31 0.69
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_24482| Best HMM Match : KID (HMM E-Value=0.045) 31 0.69
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28) 31 0.91
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 31 1.2
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 30 1.6
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 30 1.6
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 30 1.6
SB_45653| Best HMM Match : zf-GRF (HMM E-Value=5.3e-16) 30 2.1
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8) 29 2.8
SB_23504| Best HMM Match : SpoIIIAC (HMM E-Value=8.5) 29 2.8
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_12722| Best HMM Match : Oxysterol_BP (HMM E-Value=1.2) 29 3.7
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10) 29 3.7
SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 29 4.9
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 4.9
SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0) 28 6.4
SB_50176| Best HMM Match : RCSD (HMM E-Value=4.9) 28 6.4
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 6.4
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_50434| Best HMM Match : XPA_C (HMM E-Value=2.1e-05) 28 8.5
SB_45828| Best HMM Match : S-antigen (HMM E-Value=0.0095) 28 8.5
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.5
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51) 28 8.5
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29) 28 8.5
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 28 8.5
SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
Length = 265
Score = 35.9 bits (79), Expect = 0.032
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSF 180
E E K +N K+ Q + N + K +++ K + G + N S DSF
Sbjct: 37 EDEKKKELLQNPVKMK-QLKEMLEANVGKSKKKKGKKDKKKKKEKRGGPSRHNNASEDSF 95
Query: 181 GIQEEDKVKSPEEEALSAFVYPETSRRS--KSH*TFYSTRKARTEPTESPKLR 333
EE+K +S ++SR+S KS ++RK R +ESP +R
Sbjct: 96 DSGEEEKRNKNSARKMSPINGHKSSRKSRHKSDKKERASRKRRHSRSESPPVR 148
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 34.3 bits (75), Expect = 0.098
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSF 180
+KE + ++Q + D+ ++ K + ++ K + +++ KKGK I KN +
Sbjct: 769 KKEEEEEEEEDQEEEDEDSSGKKKGKKDSSESEKGKAKKQRKGREKKGKEIKKNDDEEEE 828
Query: 181 GIQEEDKVKSPEEE 222
+EED + +EE
Sbjct: 829 RDEEEDDEEDDDEE 842
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 33.1 bits (72), Expect = 0.23
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDDQ-TNSSTKNNEQT--TMPTKSISTQEQTKTSKKGKGIYKNTST 171
E E P +TK D+ TNSS K + K IS+ + + G G + +
Sbjct: 145 EDEYKPEPKTKRTKASDKKTNSSKKTAGRPGRRKSAKVISSDSDGEDDRDGNGEQSKSGS 204
Query: 172 DSFGIQEEDKVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPTESPK 327
+S +EE++ + EE+ L+ +T + K+ T + K R PT+ +
Sbjct: 205 ESDDDEEEEEEEEKEEKKLTQKKKGKTPEQKKTPGTKKAASKQR-HPTDEKR 255
>SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66)
Length = 424
Score = 32.7 bits (71), Expect = 0.30
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 52 QTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPEEEALS 231
QT ST N+ TT P + ST Q+ +S TS++S VKS A S
Sbjct: 339 QTQPSTSNSTATTWPPAT-STLLQSASSTA-------TSSNSTSTATSMSVKSRSHIASS 390
Query: 232 AFVYPETSRRSKSH-*TFYSTRKARTEPTES 321
P TS R+K H + S K R++ T+S
Sbjct: 391 TVQQPSTSTRNKEHPKSGQSKSKGRSKYTQS 421
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 31.9 bits (69), Expect = 0.52
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 13 TKIPTKNQTKIDDQTNSSTKNNEQT-----TMPTKSISTQEQTKTSKKGKGIYKNTSTDS 177
TK K +TK +T+S TK + +T T ++ T TKTS K K ++ +
Sbjct: 58 TKTSLKTKTKGKTRTSSKTKTSHKTKTSRNTKTSRKTKTSSNTKTSLKTKTSRNTKTSRN 117
Query: 178 FGIQEEDKVKSPEEE 222
+ +DK K +++
Sbjct: 118 TKTKPQDKNKPQDQD 132
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 31.5 bits (68), Expect = 0.69
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 7 EPTKIPTKNQT-KIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFG 183
+P + +KN+T K DQ + + ++ + M TK+ Q+Q K + + + + T T
Sbjct: 296 KPRQASSKNKTSKPQDQDKQAARPSQASRM-TKTSKPQDQVKQAARSRQASRKTKTSK-- 352
Query: 184 IQEEDKVKSPEEEA 225
+Q++DK + +A
Sbjct: 353 LQDQDKQAAKPRQA 366
>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 31 NQTKIDDQTNSSTKNNEQT-TMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQ-EEDKV 204
N T D+ STKNN+++ P S+ ++ K Y+ D G+Q ++D V
Sbjct: 237 NPTSADNNDVQSTKNNDESEANPQTSVQGDKEDDVKPKN---YEGNVEDLGGVQKKDDSV 293
Query: 205 KSPEEE 222
K +EE
Sbjct: 294 KDEDEE 299
>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
Length = 1714
Score = 31.5 bits (68), Expect = 0.69
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +1
Query: 13 TKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQE 192
T T + S+T T PT + + TSK KG KN + +E
Sbjct: 53 THATTNTHATSNTHATSNTHATSNTPKPTSNTLLSKMADTSKDQKGQNKNEESIKIR-KE 111
Query: 193 EDKVKSPEEEALSAFVYPETSRRSK 267
+++ K+ E A S R SK
Sbjct: 112 KNEAKNSETSAASEIAEKPKGRESK 136
>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
Length = 327
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 25 TKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDS 177
T+N +N+ST+NN +T + + ++ TS N ST +
Sbjct: 137 TRNNNNSTSNSNNSTRNNNNSTSNSNNSTSNSNNSTSNSNNSSNNNNSTSN 187
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 64 STKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPEEEALSA 234
+TK + T + K+ + EQT T+ K G+ T + GIQ +P + ++SA
Sbjct: 912 TTKKSTFTLLRNKANESPEQTVTNGKQTGLRTTTKSTQIGIQTVAPSHTPLKSSVSA 968
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDD-QTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDS 177
EK+ +IP + K S +QTT+P++ + ++++T T K KG +
Sbjct: 408 EKDSFQIPENVRIKTGKADIGSQNAEFDQTTLPSQKLGSEDKT-TFKTKKGFTISVYKGD 466
Query: 178 FGIQEEDKVKSPEEEAL 228
+ D + SP EAL
Sbjct: 467 ITEEAVDAIASPIGEAL 483
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 664 SEQVMLFRIMGSWAPQYKNSCDRSINTIQ 578
+ +++L GSWAPQY++ RS+N ++
Sbjct: 972 ARKILLIFTGGSWAPQYRSFRQRSLNQLK 1000
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDD-QTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDS 177
EK+ +IP + K S +QTT+P++ + ++++T T K KG +
Sbjct: 448 EKDSFQIPENVRIKTGKADIGSQNAEFDQTTLPSQKLGSEDKT-TFKTKKGFTISVYKGD 506
Query: 178 FGIQEEDKVKSPEEEAL 228
+ D + SP EAL
Sbjct: 507 ITEEAVDAIASPIGEAL 523
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSF 180
E +P ++P Q++ + NSS++ + SI QT K K + STD+
Sbjct: 708 ENKPKELPKWLQSQKNQAPNSSSETKDSKWPQAPSIPDNTQTNEPNKPKWLQSGQSTDA- 766
Query: 181 GIQEEDKVKSPE 216
I ++ K +
Sbjct: 767 -ISQDSKASEEQ 777
>SB_45653| Best HMM Match : zf-GRF (HMM E-Value=5.3e-16)
Length = 470
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 19 IPTK-NQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEE 195
+PT N K+ +T S N + P+ S K +K K +NT + FG +
Sbjct: 292 VPTDLNNEKVISETELSASNTTKKRAPSSG-SAVPNPKRAKTEKSTRQNTLLNFFGSKNV 350
Query: 196 DKVKSPE 216
K SP+
Sbjct: 351 TKASSPK 357
>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Frame = +1
Query: 25 TKNQTKIDDQTNSSTKN------NEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGI 186
T+N ++ + +T+N +T T++ ST+ K S K + +T+++
Sbjct: 160 TENYKATENYSTKATENYSTKSKENNSTKATENYSTKATEKYSTKATENFSTKATENYST 219
Query: 187 QEEDKVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPTE 318
+ +K + E S + S ++ + + +T K T+ TE
Sbjct: 220 KATEKYSTKASENYSTKATEKYSTKAAENYSTKATEKYSTKATE 263
>SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8)
Length = 296
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 2 KRNQPKYQRRTKRK*TIKQIHRRKT 76
K+ QP+ Q+RTK+K +K I RRKT
Sbjct: 213 KQQQPQQQQRTKKK--LKTIQRRKT 235
>SB_23504| Best HMM Match : SpoIIIAC (HMM E-Value=8.5)
Length = 121
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 31 NQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKK 141
NQTK DDQ +++E T + TQ+QTK +K
Sbjct: 13 NQTK-DDQEQDGDQHSEPTMFVETELHTQQQTKIIQK 48
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 29.1 bits (62), Expect = 3.7
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Frame = +1
Query: 13 TKIPTKNQ---TKIDDQTNSSTKNNEQTTMP-TKSISTQEQTKTSKKGKGIYKNTSTDSF 180
TK PT Q T I +T TT+P TK +T +QT T+ K +T
Sbjct: 216 TKQPTTTQQTTTTIPSTKQPTTTQQTTTTLPSTKQPTTTQQTTTTLPST---KQPTTPQL 272
Query: 181 GIQEEDKVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPTE-SPKLRK 336
K P + P T + + + T + T+PT SP R+
Sbjct: 273 TTTTFPSTKQPTTTQQTTATLPSTKQPTTTQQTTATLPTPSTKPTTVSPTTRQ 325
Score = 28.3 bits (60), Expect = 6.4
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Frame = +1
Query: 13 TKIPTKNQ---TKIDDQTNSSTKNNEQTTMP-TKSISTQEQTKTSKKGKGIYKNTSTDSF 180
T+ PT NQ T + +T TT+P TK +T +QT T+ K +T
Sbjct: 200 TRQPTTNQQTTTTLPSTKQPTTTQQTTTTIPSTKQPTTTQQTTTTLPST---KQPTTTQQ 256
Query: 181 GIQEEDKVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPT 315
K P L+ +P T + + + T +T + +PT
Sbjct: 257 TTTTLPSTKQPTTPQLTTTTFPSTKQPTTTQQT-TATLPSTKQPT 300
>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 4 KEPTKIPTKNQTKIDDQT-NSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNT 165
K+ T P+ + + + N +TKN +Q ++ K STQ+ K S +G K T
Sbjct: 553 KKNTSRPSSVTSSLTSSSENLTTKNTKQKSLLLKESSTQQDRKNSPRGVRDNKKT 607
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 40 KIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTST---DSFGIQEE 195
K DQTN++ K+ + I T E++ KKGK N S DS ++EE
Sbjct: 327 KKKDQTNAAKKDEKTMHAENTIIGTAEKSVEDKKGKKKNYNKSVEREDSMAMKEE 381
>SB_12722| Best HMM Match : Oxysterol_BP (HMM E-Value=1.2)
Length = 640
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +1
Query: 52 QTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPEEEALS 231
+T+ STKN+E + T + +++ KT GKG N D ++ +SP++E+ +
Sbjct: 292 RTDESTKNDESSEQDTTEDTKRDKGKT---GKGSNGNERGDRTECKKASPPESPKKESKT 348
Query: 232 AFV 240
+ +
Sbjct: 349 STI 351
>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
Length = 517
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +1
Query: 37 TKIDDQTNSSTKNNEQTTMPTKS----ISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKV 204
+K +D + S +NE PTK+ +S Q K S G Y + G E +
Sbjct: 419 SKAEDASGSDLNHNENACRPTKAGHKILSGVSQAKDSSGGNEYYNENACQELGGGEAHQG 478
Query: 205 KSPEE 219
P E
Sbjct: 479 DEPRE 483
>SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTK 102
E +P K P TK DD+ ++ NN MP +
Sbjct: 14 EIQPPKAPEAKDTKEDDKNKANKNNNRGRNMPRR 47
>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 172 DSFGIQEEDKVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEP 312
D+F + +E+ ++ +E+A A ETS++S++ T YS+ K + P
Sbjct: 520 DTFALDDEEPQEAQQEKASEA---AETSKQSEALSTGYSSAKTSSRP 563
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Frame = +1
Query: 25 TKNQTKIDDQTNSSTKNNE---QTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEE 195
T+ + D N TK N+ T K S T+T K+ K + S Q E
Sbjct: 654 TEQTSNGGDLGNQETKQNQVSRNTRKRPKRGSQLTPTRTPKRAKQNLEKQSARELDSQSE 713
Query: 196 DKVKSPEEEALSA 234
DK PEE A
Sbjct: 714 DKEDVPEEPCKGA 726
>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 830
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 100 KSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPEEEALS 231
K+ T+EQ KTSKK + K TS S G + P+++++S
Sbjct: 636 KTKKTEEQPKTSKKSE--KKKTSASSQGKESSRPAFKPDKQSVS 677
>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
Length = 603
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +1
Query: 46 DDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPEEEA 225
DD N N + ++ + + Q+ K K KN+ +S E+ + S E +
Sbjct: 251 DDDDNDDDDNEDDNSVKKEKKTGQQNKKKGKSASKAKKNSDDESEASSEDGYIDSKEVDY 310
Query: 226 LS 231
+S
Sbjct: 311 MS 312
>SB_50176| Best HMM Match : RCSD (HMM E-Value=4.9)
Length = 396
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 13 TKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKG-----KGIYKNTSTDS 177
T++ T K + ST + Q P+K IS Q +T ++ K G K+T +
Sbjct: 32 TQVRTPGTVKSTQVSTPSTVKSTQVRTPSKVISAQVRTPSTVKSAQVRTPGTVKSTQVRT 91
Query: 178 FGIQEEDKVKSP 213
G + +V++P
Sbjct: 92 PGTVKSTQVRTP 103
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/105 (22%), Positives = 44/105 (41%)
Frame = +1
Query: 16 KIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEE 195
K T+++ K++D +SS+K E+ K + T+ K + K +TD+ + E
Sbjct: 172 KRTTRSKRKLND--DSSSKETEEENPKPKRV-----TRGKKNAEATAKVDTTDNSFVDFE 224
Query: 196 DKVKSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPTESPKL 330
D+ + + S + E S T ST E + K+
Sbjct: 225 DEKSNKNKRKQSEIIQEEKVESSTDFETHVSTTPENQESAKKLKM 269
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 529 SFKFLKHSYLLMNLIFIVVSGTPYSFYKEVLSGVTLDA 416
+FK KH ++M LI ++V G FYK +G + +A
Sbjct: 386 TFKHHKHLQVMMVLIIMIVIGMMRVFYKSTDAGTSENA 423
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +1
Query: 31 NQTKIDDQTNS---STKNNEQTT---MPTKSISTQEQTKTSKKGKGIYKNTSTDS 177
N+T D+ TNS +T +N++TT T + +T + TS Y +T++D+
Sbjct: 159 NETTSDNDTNSDNDTTSDNDKTTDNDTTTDNDTTSDNDTTSDNNTTSYNDTTSDN 213
>SB_50434| Best HMM Match : XPA_C (HMM E-Value=2.1e-05)
Length = 830
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 52 QTNSSTKNNEQ-----TTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVKSPE 216
++++STK E+ T+P + +S++ T ++ K K +TD + K PE
Sbjct: 609 ESSTSTKLQEEGACLLQTLPQRQVSSEMHGHTKEQKKATSKRPATDVGKASSQAKKTKPE 668
Query: 217 EEALSA 234
+ +S+
Sbjct: 669 QPKMSS 674
>SB_45828| Best HMM Match : S-antigen (HMM E-Value=0.0095)
Length = 250
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 7 EPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSK-KGKGIYKNTSTDSFG 183
+ +K+P + +K+ S + + +PT +S T SK K TD+
Sbjct: 75 DASKVPPTDASKVPPTDASKVPTTDASKVPTTDVSKVPPTDASKVPPTDASKVPPTDASK 134
Query: 184 IQEEDKVKSP 213
+ D +K+P
Sbjct: 135 VPPTDAIKAP 144
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +1
Query: 13 TKIPTKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKG 150
+ +PT++Q+ NSST++ +T S + + + T+++ G
Sbjct: 816 SSLPTRDQSSSTRDRNSSTRDQSSSTRDQSSSTRDQSSITTEQSSG 861
>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/101 (19%), Positives = 43/101 (42%)
Frame = +1
Query: 25 TKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKV 204
T+ T +TN+ ++ Q T T+ S+ +QT + + + T+T ++
Sbjct: 351 TQQTTNTQQKTNTQLTSSTQHTTNTQLTSSTQQTSSMQPTTDTQQTTNTQQTSNTQQ--- 407
Query: 205 KSPEEEALSAFVYPETSRRSKSH*TFYSTRKARTEPTESPK 327
S ++ S +T + S T + +++ T SP+
Sbjct: 408 TSNTQQTTSMQHTTKTKHKGNSQHTAITQHAEKSQNTASPR 448
>SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)
Length = 477
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 1 EKEPTKIPTKNQTKIDDQTNSSTKNNEQTTMPTK 102
E +P K P TK DD+ ++ NN +P +
Sbjct: 14 EIQPPKAPEAKDTKEDDKNKANKNNNRGRNLPRR 47
>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
Length = 690
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 25 TKNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSK-KGKGIYKNTSTDSFGIQEE 195
+K Q D +TK + T P+K ++QE+ S K + TDS GI +
Sbjct: 25 SKEQAWTDTDDTETTKESADTAGPSKVTNSQEEQPGSVISVKEASEENKTDSVGISSD 82
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 7 EPTK-IPTKNQTKIDDQTNSSTKNNEQTTM-PTKSISTQEQTKTSK 138
+PT IP+ T I +T +S N+E+ + P K++ Q+ TSK
Sbjct: 1044 KPTPAIPSSGSTAITAKTTTSGSNHEKRQLFPDKTVVVTTQSTTSK 1089
>SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +1
Query: 28 KNQTKIDDQTNSSTKNNEQTTMPTKSISTQEQTKTSKKGKGIYKNTSTDSFGIQEEDKVK 207
K+ TK++ +T NE P +S TQE+ SKKG + TD G+ +E K
Sbjct: 547 KDATKVESET------NEVPDEPKQSAETQEKV-DSKKG-----SPKTDEGGVADEAKAA 594
Query: 208 SPEE 219
EE
Sbjct: 595 KGEE 598
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,995,512
Number of Sequences: 59808
Number of extensions: 350653
Number of successful extensions: 1263
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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