Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0245.Seq
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    93   4e-18
UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...    82   1e-14
UniRef50_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia sp...    33   5.6  
UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, wh...    33   7.4  
UniRef50_Q4P5T7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.4  
UniRef50_Q1IW01 Cluster: Putative uncharacterized protein; n=1; ...    32   9.8  

>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 93.5 bits (222), Expect = 4e-18
 Identities = 49/72 (68%), Positives = 49/72 (68%)
 Frame = -1

Query: 497 DAPCSGALSAAGVVVTRSVXXXXXXXXXXXXXXXXXXXXXXXAGFPRQALNRGLPLGFRF 318
           DAPCSGALSAAGVVVTRSV                       AGFPRQALNRGLPLGFRF
Sbjct: 2   DAPCSGALSAAGVVVTRSVTATLASALAPAPFAFFPSFLATFAGFPRQALNRGLPLGFRF 61

Query: 317 SALRHLDPKKLD 282
           SALRHLDPKKLD
Sbjct: 62  SALRHLDPKKLD 73


>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 38/39 (97%), Positives = 38/39 (97%)
 Frame = +2

Query: 509 SGKCARNPYLFIFLNTFKYVSAHETITLINASIILKKAE 625
           SGKCARNPYLFIFLNTFKYVSAHETITLINASIILKK E
Sbjct: 27  SGKCARNPYLFIFLNTFKYVSAHETITLINASIILKKEE 65


>UniRef50_A0ZLG1 Cluster: Beta-D-galactosidase; n=1; Nodularia
           spumigena CCY 9414|Rep: Beta-D-galactosidase - Nodularia
           spumigena CCY 9414
          Length = 72

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 12/16 (75%), Positives = 16/16 (100%)
 Frame = +2

Query: 2   RPSQQLRTLNGEWQIV 49
           RPSQQLR+LNGEW+++
Sbjct: 57  RPSQQLRSLNGEWRLM 72


>UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_33,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1173

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 156 VYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTI 43
           +++F L G L    +WLKN+    KF++ F ++L L +
Sbjct: 665 IFNFSLQGALSYIDFWLKNQHFDDKFSSTFTQLLLLAL 702


>UniRef50_Q4P5T7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 779

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 465 GCGGYAQRDRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKSG 340
           G GGY+QR +    R S R+F   P L R + R    S +SG
Sbjct: 292 GSGGYSQRHKSASSRESIRTFFPAPSLPRLISRPGSQSRESG 333


>UniRef50_Q1IW01 Cluster: Putative uncharacterized protein; n=1;
           Deinococcus geothermalis DSM 11300|Rep: Putative
           uncharacterized protein - Deinococcus geothermalis
           (strain DSM 11300)
          Length = 171

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 169 ECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGSRCRKA 315
           E  SS    S +++R +QR+       G  PL +PS  S  LG  CR+A
Sbjct: 32  EVLSSHSHSSGLQDRPVQRRSESPSRDGLLPLNKPSRESRLLGRACRQA 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,710,939
Number of Sequences: 1657284
Number of extensions: 11459516
Number of successful extensions: 25086
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25078
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)