Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0245.Seq
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    31   0.63 
At4g33630.2 68417.m04778 expressed protein                             28   5.8  
At4g33630.1 68417.m04777 expressed protein                             28   5.8  
At1g64960.1 68414.m07363 expressed protein                             27   7.7  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   7.7  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 154 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREP 273
           D+D  E CS+ E ES ++E  L +++A N++ GR  L  P
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGRDLLVTP 472


>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 420 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 322
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 420 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 322
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 301 RCRKALNRNPKGSPRF 348
           RCR  +NRNPK   RF
Sbjct: 552 RCRTLINRNPKAGARF 567


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +1

Query: 142  IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 237
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,525,296
Number of Sequences: 28952
Number of extensions: 248062
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)