Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0244.Seq
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 109 3e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 81 2e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 65 9e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 55 1e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 2e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 7e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 2e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 50 5e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 48 1e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 47 3e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 6e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 6e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 2e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 2e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 43 4e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 42 9e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 9e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 41 2e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 41 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 36 0.006
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.025
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 33 0.033
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.099
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.099
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.2
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 109 bits (263), Expect = 3e-25
Identities = 52/76 (68%), Positives = 58/76 (76%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
S TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +R
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR 225
Query: 695 NTCVFGGAPKREQARD 742
NTCV+GG P+ Q RD
Sbjct: 226 NTCVYGGVPRGPQIRD 241
Score = 99 bits (238), Expect = 3e-22
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK
Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLV 510
+G++ PTPIQ Q WP+AMSG+++V
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMV 163
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/76 (46%), Positives = 52/76 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 695 NTCVFGGAPKREQARD 742
C +GGAP ++Q D
Sbjct: 522 ACCAYGGAPIKDQIAD 537
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
+ F K+FY + SP EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLV 510
++GY++PT IQAQ P SG++++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVI 459
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 65.3 bits (152), Expect = 9e-12
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 685
++TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL 352
Query: 686 YVRNTCVFGGAPKREQA 736
R V GG EQ+
Sbjct: 353 GFRCVSVVGGHAFEEQS 369
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/59 (28%), Positives = 36/59 (61%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q + + ++
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLK 266
Query: 695 NTCVFGGAPKREQAR 739
V+GGAPK EQAR
Sbjct: 267 AVVVYGGAPKSEQAR 281
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 495
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 496 GKNLV 510
G+++V
Sbjct: 202 GRDVV 206
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 54.0 bits (124), Expect = 2e-08
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH--- 679
+QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA +
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 680 TSYVRNTCVFGGAPKR-EQAR 739
+ ++ + V GG K+ E+AR
Sbjct: 245 SHWIVSCNVIGGEKKKSEKAR 265
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 52.4 bits (120), Expect = 7e-08
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLR 169
Query: 695 NTCVFGGAPKREQ 733
+ + GG EQ
Sbjct: 170 SVAIVGGVSLEEQ 182
Score = 28.7 bits (61), Expect = 0.92
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
F+ + + + G+K PTPIQ + P+ + G+++V
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.2 bits (117), Expect = 2e-07
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
+QTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + V
Sbjct: 90 AQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 692 RNTCVFGGAPKREQA 736
R+ + GG QA
Sbjct: 144 RSVVIVGGMDMVTQA 158
Score = 31.9 bits (69), Expect = 0.099
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 49.6 bits (113), Expect = 5e-07
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQ 655
+QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 656 QVAADFGHTSYVRNTCVFGGAPKREQAR 739
+ + F + S+VR V+GGA R Q R
Sbjct: 273 EESRKFCYRSWVRPCAVYGGADIRAQIR 300
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 48.0 bits (109), Expect = 1e-06
Identities = 29/76 (38%), Positives = 40/76 (52%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKT A+ LP I + P G AL+L PTRELA QI + A G ++
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLK 105
Query: 695 NTCVFGGAPKREQARD 742
+ + GG Q+ D
Sbjct: 106 HALIVGGMDMIRQSID 121
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.8 bits (106), Expect = 3e-06
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 661
+++TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 57 QARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +1
Query: 361 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LVA
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 46.0 bits (104), Expect = 6e-06
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
++TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA + +
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHH 189
Query: 689 VRNTCVFGGAPKREQA 736
V GGA +R +A
Sbjct: 190 QTFGIVIGGANRRAEA 205
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 6e-06
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFS 141
Query: 695 NTCVFGGAPKREQ 733
+ GG +E+
Sbjct: 142 AGLIIGGNNYKEE 154
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/74 (32%), Positives = 41/74 (55%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
+++TG+GKTLA++L A + P +++L+PTRELA QI + A + + +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGI 141
Query: 692 RNTCVFGGAPKREQ 733
R + GG K +
Sbjct: 142 RVSYAIGGNSKMRE 155
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 43.2 bits (97), Expect = 4e-05
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAADFGHTS 685
++ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q +
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFELIKPSP 219
Query: 686 YVRNTCVFGGAPKREQAR 739
+R + GG ++Q R
Sbjct: 220 NIRVMSITGGLAVQKQQR 237
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 41.9 bits (94), Expect = 9e-05
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
++Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 692 RNTCVFGGAPKRE 730
GG R+
Sbjct: 117 ECHACIGGTLVRD 129
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
+SQ+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 692 R 694
+
Sbjct: 214 K 214
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 41.1 bits (92), Expect = 2e-04
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+++P++ ++ + + L+L PTRELA Q QV G V
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNV 141
Query: 692 RNTCVFGGAPKRE 730
+ GG R+
Sbjct: 142 KVMVTTGGTTLRD 154
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + G+ G++ P+PIQ + PIA+SG++++A
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 700
TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA + +
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVC 362
Query: 701 CVFGGAPKREQARD 742
GG + Q ++
Sbjct: 363 LCIGGLSLKLQEQE 376
Score = 32.7 bits (71), Expect = 0.057
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
F+ N + +G+ +G++ PT IQ + P+A+ GK++V
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 688
++Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 689 VRNTCVFG 712
+ C+ G
Sbjct: 119 QCHACIGG 126
Score = 32.3 bits (70), Expect = 0.075
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 505 LVA 513
++A
Sbjct: 61 VIA 63
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 652
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.033
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFG-HTS 685
++++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F +
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 686 YVRNTCVFGG 715
VR +GG
Sbjct: 148 DVRTAVFYGG 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.099
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 652
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.099
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 652
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 244 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 71
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 70 HDYFSDLVEDVYLNYGFFLTQG 5
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 453 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 328
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 444
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVS 360
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 646
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 442 PLSLHLVAHNQENL--LLQSIE 383
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,146
Number of Sequences: 5004
Number of extensions: 66803
Number of successful extensions: 236
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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