Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0240.Seq
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   1.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 310  WTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPS 426
            W+S ++   W  T    +  +R   +S   RPT  ++P+
Sbjct: 1043 WSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPT 1081



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 349  PVSTSHWSRTRQSSLPRRPT 408
            P +T+HW     +S   RPT
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPT 1196



 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 561  PSKPSVLSNSSTGVQPVSRSVSTTSHP 641
            P+KPS    S+T       + STT+ P
Sbjct: 1169 PTKPSYRPPSTTNHWQTKTTTSTTTRP 1195



 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 208  YGGRCHRWLHC 176
            Y G C R+LHC
Sbjct: 1287 YPGDCTRYLHC 1297



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 624  STTSHPPWCPEATWPRFNVPSACCPTP 704
            STT++P W P    P     S   P P
Sbjct: 1362 STTNYPEWQPTEWHPPIPPTSEKPPLP 1388


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 529 RTQGCERGHRYHQNQAYYPIRRLVSNRFQGRY--QLPATHRGARRRLGQGSTCRLHV 693
           R    ER      N  +  +R+ +       +  Q P+T RGA ++L +  T RL V
Sbjct: 89  RRNARERNRVKQVNNGFATLRQHIPASVAAAFAPQGPSTGRGASKKLSKVETLRLAV 145


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 464 LVGGLEACVCDLG 426
           L+GG  +C CDLG
Sbjct: 703 LMGGKWSCDCDLG 715


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,518
Number of Sequences: 336
Number of extensions: 4112
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)