Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0239.Seq
         (535 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2UMD5 Cluster: Putative uncharacterized protein; n=1; ...   129   3e-29
UniRef50_Q0TJ33 Cluster: Putative uncharacterized protein; n=4; ...   120   2e-26
UniRef50_Q4DWC1 Cluster: Putative uncharacterized protein; n=1; ...    34   1.8  
UniRef50_Q05FK9 Cluster: Putative GTPase; n=1; Candidatus Carson...    33   4.1  
UniRef50_A7CSC0 Cluster: Binding-protein-dependent transport sys...    32   7.2  
UniRef50_Q6FN66 Cluster: Similar to tr|Q12482 Saccharomyces cere...    32   7.2  
UniRef50_Q239Y3 Cluster: Cation channel family protein; n=1; Tet...    32   9.5  
UniRef50_Q1DW98 Cluster: Predicted protein; n=1; Coccidioides im...    32   9.5  

>UniRef50_A2UMD5 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli B|Rep: Putative uncharacterized protein
           - Escherichia coli B
          Length = 64

 Score =  129 bits (312), Expect = 3e-29
 Identities = 63/63 (100%), Positives = 63/63 (100%)
 Frame = -3

Query: 443 MESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVIL 264
           MESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVIL
Sbjct: 1   MESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVIL 60

Query: 263 LAR 255
           LAR
Sbjct: 61  LAR 63


>UniRef50_Q0TJ33 Cluster: Putative uncharacterized protein; n=4;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli O6:K15:H31 (strain 536 / UPEC)
          Length = 82

 Score =  120 bits (289), Expect = 2e-26
 Identities = 61/82 (74%), Positives = 62/82 (75%)
 Frame = -3

Query: 443 MESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVIL 264
           MESMSAEIFLITHPRVVFFFF SYQSIKTHVNTLLSTQK   F     F   K  +    
Sbjct: 1   MESMSAEIFLITHPRVVFFFFCSYQSIKTHVNTLLSTQKIFCFLLNLRFPLSKITRQSFF 60

Query: 263 LARADCCDMSCAQAVTNLVFLQ 198
           L  ADCCDMSCAQAVTNLVFLQ
Sbjct: 61  LPVADCCDMSCAQAVTNLVFLQ 82


>UniRef50_Q4DWC1 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1010

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 160 SCFFSTPP-WTIFYCKKTR---FVTACAQDISQQSARARRMTVWCFLIAENGDLKENKIF 327
           +C+   P  WT  YCK  +   F T C   ++ +S +    TV C    +  D++    F
Sbjct: 258 TCYHERPHLWTCSYCKYDKNSIFFTECHNCLASRSRQVSDSTVLCPTCHQRNDVQWEMCF 317

Query: 328 FCV 336
           FC+
Sbjct: 318 FCM 320


>UniRef50_Q05FK9 Cluster: Putative GTPase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Putative GTPase - Carsonella
           ruddii (strain PV)
          Length = 254

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 6   VNLKVLLSLEMIEKLYIWFL-LHNFKKSYKW**LTNNAYKKYFGVVLSSCKTFLF--FLH 176
           +NL ++  L  I K Y +FL L NFK +Y W  L  N    +F  + +  K  +F  F  
Sbjct: 175 INLNIIHILIKIIKFYFYFLYLKNFKNNYYWIILNINK-NIFFLKLFNKIKLIVFPTFFI 233

Query: 177 TSVDNFLLQK 206
           + + NF L+K
Sbjct: 234 SKIFNFGLKK 243


>UniRef50_A7CSC0 Cluster: Binding-protein-dependent transport
           systems inner membrane component precursor; n=1;
           Opitutaceae bacterium TAV2|Rep:
           Binding-protein-dependent transport systems inner
           membrane component precursor - Opitutaceae bacterium
           TAV2
          Length = 304

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 325 IFCFLLNLRFPLSKSTRQSFFLPVLIAAICLA 230
           +   LLNLR P     R  +FLP ++  +CLA
Sbjct: 88  LLALLLNLRVPAKGVLRTIYFLPTIVPMVCLA 119


>UniRef50_Q6FN66 Cluster: Similar to tr|Q12482 Saccharomyces
           cerevisiae YPR021c; n=1; Candida glabrata|Rep: Similar
           to tr|Q12482 Saccharomyces cerevisiae YPR021c - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 919

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 23/97 (23%), Positives = 48/97 (49%)
 Frame = -3

Query: 416 LITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVILLARADCCDM 237
           +IT   ++ F    Y  + T+++    +Q N+LFS  +      +H+T ++    +  ++
Sbjct: 371 VITKKNLMDFLNKQYNKV-TNISEFSPSQINLLFSIVANSKEYNRHRTRLI---QNSQEL 426

Query: 236 SCAQAVTNLVFLQ*KIVHGGVEKKQERFT*RKDYTEI 126
           +   +  N  F+  + +HGG  KK+E  T   +Y +I
Sbjct: 427 NHEDSEINH-FIHNEFMHGGRNKKEELETFNDNYKDI 462


>UniRef50_Q239Y3 Cluster: Cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1366

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 205 FCSKKLSTEVWRKNKNVLHDERTTPKYFLYALLVSYHHLYD 83
           F  K++S   WR   N+ H+ R   KY  +A ++ YH+LY+
Sbjct: 863 FIDKRIS---WR---NIYHEARNDLKYLRWAYVIEYHNLYN 897


>UniRef50_Q1DW98 Cluster: Predicted protein; n=1; Coccidioides
           immitis|Rep: Predicted protein - Coccidioides immitis
          Length = 273

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -3

Query: 446 TMESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVI 267
           T E   A I ++  P ++ F   S   + TH++TLLS    +  S +   +   K +T +
Sbjct: 61  TRERRHAAISILNDPELLMFHALSSNEVCTHISTLLSLSLPLFCSSEKQGNEDLKSRTGV 120

Query: 266 LLARA 252
           +L +A
Sbjct: 121 VLRKA 125


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,210,543
Number of Sequences: 1657284
Number of extensions: 10940912
Number of successful extensions: 26291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26284
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)