Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0239.Seq
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   1.8  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   3.1  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.1  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    25   7.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.4  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   9.4  

>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 YFGVVLSSCKTFLFFLHTSVDNFLLQKDE 212
           +   VLS    F F+LHT+ +NF L K++
Sbjct: 75  FLASVLSCAIIFRFYLHTNRENFSLFKND 103


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 181 EVWRKNKNVLHDERTTPKYFLYALLVSYH 95
           +VW + +N +  +   P YF +  L+++H
Sbjct: 149 DVWERLENAVGSDSEKPMYFRFLTLMAWH 177


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -3

Query: 422 IFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVI 267
           +FLI + + +  FF  +   K  +N+L      +LFSFK+ +S +K  +T+I
Sbjct: 29  MFLILYSQEILSFF--FMCSKFSMNSLKFC---VLFSFKTVYSLLKLIKTLI 75


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 383 FSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKH 279
           F S  SIK + N  LS Q +I     SPF+A +++
Sbjct: 178 FLSTPSIKNNANKSLSPQDSISIFGTSPFNAYQQN 212


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 388  SFLVHTKVLKPT*IRCYLRKKIFCFLLNLRFPLSKS 281
            SF+V+   L P+ +R +LR K    + +  FP+SKS
Sbjct: 3427 SFVVYAGNLDPS-MRIFLRNKCEPIISSFGFPISKS 3461


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 210 EVCHGLCARHIAAI---STGKKNDCLVLFDSGKR 302
           ++ HG+ A H+AAI    TGK  D +   D  KR
Sbjct: 131 DLSHGVTASHLAAIVEKHTGKIADIVYKQDQAKR 164


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 166 FFSTPPWTIFYCKKTRFVTACAQDISQQSARARRMTVW 279
           F+S   W  F     +FVT C Q   Q S+ A R  ++
Sbjct: 516 FYSNFIWISFIV--AQFVTLCTQTYDQTSSTANRYLIF 551


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 174 GEKTRTFYMTKGLHRNIFYMHY 109
           GE+     M +GLH+N F  H+
Sbjct: 370 GERDLVLPMYRGLHKNAFATHF 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,427
Number of Sequences: 5004
Number of extensions: 50555
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)