Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0239.Seq
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0589 + 20850249-20850491,20850583-20851839                       31   0.77 
04_01_0487 + 6406826-6407086,6413538-6413996,6414401-6414570,641...    29   3.1  
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410     27   7.2  
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524...    27   9.5  

>12_02_0589 + 20850249-20850491,20850583-20851839
          Length = 499

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 208 SFCSKKLSTEVWRKNKNVLHDERTTPKYFLYALLVSYH 95
           ++CSKK S +   K  +++ DER  P +  ++LL S +
Sbjct: 206 TYCSKKNSVKAAEKVYDLMKDERVVPDWMTFSLLGSIY 243


>04_01_0487 +
           6406826-6407086,6413538-6413996,6414401-6414570,
           6415146-6415175,6415777-6415939,6416020-6417132
          Length = 731

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 243 RYVLRTSRDKPRLFAVKNCPRRCGEKTRTFYMTK 142
           RYVL+ SR  PR F ++ C        R +Y+T+
Sbjct: 239 RYVLKLSRGHPRCFPLEICSGPTKSTLRYWYLTE 272


>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
          Length = 1279

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 256 VLIAAICLAHKP*QTSSFCSKKLSTEVWRK 167
           ++ A     H+P    SFCS + STE+ RK
Sbjct: 644 IMSAVSATEHRPSPAPSFCSVEHSTEIGRK 673


>01_05_0669 -
           24152057-24152110,24152224-24152308,24152401-24152486,
           24153129-24154341,24154441-24154529,24154607-24154639,
           24154674-24154859,24155290-24155380,24155588-24155622,
           24155736-24155817,24155968-24156020,24156404-24156469,
           24156752-24156820,24156821-24156984,24157925-24158432,
           24158543-24158602
          Length = 957

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 139 TTPKYFLYALLVS-YHHLYDFLKLCNKNQMYNFSIISKLN 23
           T P Y   + LV      + ++  CNK+ +YNF +  KLN
Sbjct: 412 TLPFYIKDSYLVHCISWTFYYMLTCNKSPLYNFMLEQKLN 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,856,652
Number of Sequences: 37544
Number of extensions: 275017
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)