Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0239.Seq
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)               31   0.78 
SB_32279| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                27   7.3  
SB_21703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)          27   9.6  

>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
          Length = 113

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 183 VDNFLLQKDEVCHGL-CARHIAAISTGKKNDCLVLFDSGKRRFKRKQNIF 329
           V N   Q+   C G  C RH     T  K     LF  GKRR+ RKQ+ F
Sbjct: 8   VVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGF 57


>SB_32279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 350 NTLLSTQKNILFSFKSPFSAIKKHQT-VILLARADCCDMSC 231
           N   ST   IL     P SA K      ILL RADC DM+C
Sbjct: 101 NGFRSTVVMILRLGPKPLSATKARDARYILLLRADCHDMNC 141


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 404 PRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVIL 264
           PR    ++  YQS++T +  L S  KN+  S  +   ++   + VI+
Sbjct: 137 PRATSGYYPGYQSLQTALVQLRSACKNVATSLVTALLSVTGRENVII 183


>SB_21703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 489 NLVVNATCILLTLRYDGKYVCGNIFNN 409
           NL  N   +++ L  +GKYVC N++NN
Sbjct: 32  NLYNNKLILVIALGGEGKYVC-NLYNN 57


>SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)
          Length = 351

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -3

Query: 350 NTLLSTQKNILFSFKSPFSAIKKHQTVILL----ARADCCD 240
           N L  T+  ILF  KSP +  K   ++ILL      AD CD
Sbjct: 11  NRLNHTKTIILFQLKSPMATSKIMLSIILLLWRYVNADVCD 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,179
Number of Sequences: 59808
Number of extensions: 362400
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)