Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0239.Seq
         (535 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54453-1|CAA38321.1|  330|Drosophila melanogaster homeobox prote...    28   7.0  
U31961-7|AAA84406.1|  330|Drosophila melanogaster ABD-AI protein.      28   7.0  
U31961-6|AAA84405.1|  590|Drosophila melanogaster ABD-AII protein.     28   7.0  
BT016031-1|AAV36916.1|  330|Drosophila melanogaster RE04174p pro...    28   7.0  
AE014297-2267|AAF55359.1|  330|Drosophila melanogaster CG10325-P...    28   7.0  
AE014297-2266|AAF55360.2|  590|Drosophila melanogaster CG10325-P...    28   7.0  

>X54453-1|CAA38321.1|  330|Drosophila melanogaster homeobox protein
           protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 189 CPRRCGEKTRTFYMTKGLHRNIFYMHY 109
           CPRR G +T T + T  L +   + HY
Sbjct: 136 CPRRRGRQTYTRFQTLELEKEFHFNHY 162


>U31961-7|AAA84406.1|  330|Drosophila melanogaster ABD-AI protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 189 CPRRCGEKTRTFYMTKGLHRNIFYMHY 109
           CPRR G +T T + T  L +   + HY
Sbjct: 136 CPRRRGRQTYTRFQTLELEKEFHFNHY 162


>U31961-6|AAA84405.1|  590|Drosophila melanogaster ABD-AII protein.
          Length = 590

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 189 CPRRCGEKTRTFYMTKGLHRNIFYMHY 109
           CPRR G +T T + T  L +   + HY
Sbjct: 396 CPRRRGRQTYTRFQTLELEKEFHFNHY 422


>BT016031-1|AAV36916.1|  330|Drosophila melanogaster RE04174p
           protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 189 CPRRCGEKTRTFYMTKGLHRNIFYMHY 109
           CPRR G +T T + T  L +   + HY
Sbjct: 136 CPRRRGRQTYTRFQTLELEKEFHFNHY 162


>AE014297-2267|AAF55359.1|  330|Drosophila melanogaster CG10325-PA,
           isoform A protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 189 CPRRCGEKTRTFYMTKGLHRNIFYMHY 109
           CPRR G +T T + T  L +   + HY
Sbjct: 136 CPRRRGRQTYTRFQTLELEKEFHFNHY 162


>AE014297-2266|AAF55360.2|  590|Drosophila melanogaster CG10325-PB,
           isoform B protein.
          Length = 590

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 189 CPRRCGEKTRTFYMTKGLHRNIFYMHY 109
           CPRR G +T T + T  L +   + HY
Sbjct: 396 CPRRRGRQTYTRFQTLELEKEFHFNHY 422


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,870,620
Number of Sequences: 53049
Number of extensions: 494329
Number of successful extensions: 1044
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)