Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0239.Seq
(535 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81105-3|CAB03217.1| 316|Caenorhabditis elegans Hypothetical pr... 31 0.39
Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical pr... 31 0.39
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 30 0.91
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 30 0.91
AF016681-2|AAY55841.1| 184|Caenorhabditis elegans Hypothetical ... 29 2.1
Z70755-4|CAA94783.2| 239|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC006655-4|AAF39877.2| 292|Caenorhabditis elegans Hypothetical ... 28 3.7
AL032637-17|CAD60427.1| 294|Caenorhabditis elegans Hypothetical... 28 4.8
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z81142-6|CAB03508.1| 344|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 27 6.4
U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related... 27 6.4
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 27 8.5
U40421-2|AAA81438.1| 453|Caenorhabditis elegans Hypothetical pr... 27 8.5
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 27 8.5
AC024206-5|AAF36051.2| 474|Caenorhabditis elegans Hypothetical ... 27 8.5
AC006692-8|AAF39973.1| 431|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z81105-3|CAB03217.1| 316|Caenorhabditis elegans Hypothetical
protein R05D7.3 protein.
Length = 316
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/55 (25%), Positives = 32/55 (58%)
Frame = -3
Query: 449 VTMESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIK 285
+ +S+ +EIF + + +++ F ++ S K + TL + K + F FK+ ++A +
Sbjct: 16 IKKKSLFSEIFAVKNFKIISINFKTHVSQKCKLKTLFARLKKLKFFFKTVWAACR 70
>Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical
protein C07A9.5 protein.
Length = 358
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 88 YDFLKLCNKNQMYNFSIISKLNKTLRL 8
Y+ +LC K+Q YNFS+ S L +T+ L
Sbjct: 251 YEHFELCLKSQGYNFSVESTLKETMSL 277
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 30.3 bits (65), Expect = 0.91
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = -3
Query: 509 LRN*IISTWLLTQPVFC*RCVTMESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQ 330
+++ + + WLLT VF + M M + LI HP + FFF+S+ I V LL+ Q
Sbjct: 608 MKSVLTAMWLLT--VFAGNLIDM--MISGTRLIPHPALEFFFYSTLMVIVMGVFILLAMQ 663
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 30.3 bits (65), Expect = 0.91
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = -3
Query: 509 LRN*IISTWLLTQPVFC*RCVTMESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQ 330
+++ + + WLLT VF + M M + LI HP + FFF+S+ I V LL+ Q
Sbjct: 608 MKSVLTAMWLLT--VFAGNLIDM--MISGTRLIPHPALEFFFYSTLMVIVMGVFILLAMQ 663
>AF016681-2|AAY55841.1| 184|Caenorhabditis elegans Hypothetical
protein F22E5.21 protein.
Length = 184
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 151 VKRSCFFSTPPWTIFYCKKTRFVTACAQDISQQS 252
V RS +S P F KT TAC Q ISQQS
Sbjct: 81 VYRSHEWSDSPMLAFETVKTEVDTACKQGISQQS 114
>Z70755-4|CAA94783.2| 239|Caenorhabditis elegans Hypothetical
protein K06A4.4 protein.
Length = 239
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 307 LKENKIFFCVDNSVFTWVLILWYELKKKN 393
L N IFFC+D S+ + + E KKKN
Sbjct: 201 LLANVIFFCMDGSLLSMFFVYPTEKKKKN 229
>AC006655-4|AAF39877.2| 292|Caenorhabditis elegans Hypothetical
protein H10D18.5 protein.
Length = 292
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 226 CAQDISQQSARARRMTVWCFLIAENGDLKENKIFFCVDNSVFTWVL 363
C+ +Q+ + C +I E D E + C+DN W L
Sbjct: 38 CSYGFAQEDPAYEKAVSECHVIQEKKDFAEAVLLKCIDNKRGEWAL 83
>AL032637-17|CAD60427.1| 294|Caenorhabditis elegans Hypothetical
protein Y43F8C.19 protein.
Length = 294
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 265 RMTVWCFLIAENGDLKENKIFFCVDNSVFTWVLILWY 375
+ V+ F++ LK ++F + +F W+ LWY
Sbjct: 229 KCAVFSFVLFIPNALKSIFLYFYIGEQIFDWITDLWY 265
>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical
protein F31C3.3 protein.
Length = 2029
Score = 27.5 bits (58), Expect = 6.4
Identities = 24/78 (30%), Positives = 37/78 (47%)
Frame = -3
Query: 431 SAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQTVILLARA 252
S+E+FL P++ F +Y+S+K V LLS + K P KKH I+L
Sbjct: 525 SSEVFLAWSPQLHLIVFDAYKSVKKTVQ-LLSFPNPSTLTRKVP---RKKH---IILTAE 577
Query: 251 DCCDMSCAQAVTNLVFLQ 198
+ ++ A N +F Q
Sbjct: 578 NFVEVQLELARNNRMFWQ 595
>Z81142-6|CAB03508.1| 344|Caenorhabditis elegans Hypothetical
protein ZK1037.9 protein.
Length = 344
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 491 STWLLTQPVFC*RCVTMESMSAEIFLITHPRVVFFFFSS 375
STWL+ F V MS+ I +T P+V F S+
Sbjct: 126 STWLILMIAFIRALVIRYPMSSRIEKLTTPKVAFIIISA 164
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 201 QKDEVCHGLCARHIAAISTGKKNDCLVLFDSGKRRFKRKQNIFL 332
+K EV HGL + HIA I T ++ + + KR ++FL
Sbjct: 265 EKIEVDHGLTSAHIAKILTKREVERIAHTYKDKRSLASTYDVFL 308
>U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related
family protein 5 protein.
Length = 961
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 328 KIFCFLLNLRFPLSKSTRQSFFLPVLIAAICLAHKP*QTSSFCSKKLSTEVWRKNKNV 155
++FC ++ L+ + F P+L A HK TS+ +K W+K NV
Sbjct: 460 RLFCIASSIALALTYILQLVLFGPILAVATRYEHKTTTTSNCNWRKWLKACWKKCINV 517
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 88 YDFLKLCNKNQMYNFSIISKLNKTLRL 8
Y +LC K+Q YNFS + L +T+ L
Sbjct: 1997 YKHFELCLKSQGYNFSAENTLKETMTL 2023
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 216 CHGLCARHIAAISTGKKNDCLVLFDSGKRRFKRKQNIF 329
C G C +H T K F G+RR+ RKQ+ F
Sbjct: 12 CDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGF 49
>U40421-2|AAA81438.1| 453|Caenorhabditis elegans Hypothetical
protein C02B8.5 protein.
Length = 453
Score = 27.1 bits (57), Expect = 8.5
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = -1
Query: 271 SFFLPVLIAAICL---AHKP*QTSSFCSKKLSTEVWRKN--KNVLHDERTTPKYFLYALL 107
S F+ V A CL A S FCS S V N KNV+ + K FL +
Sbjct: 2 SVFITVASAFDCLVLVAASEKFKSKFCSVNTSILVGNFNDFKNVIVCLKIIVKIFLLGIF 61
Query: 106 VSYHHLYDFLKLCNKNQMYN 47
+ H+Y+ + + MYN
Sbjct: 62 YNSPHMYEIYVIDCWSTMYN 81
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 216 CHGLCARHIAAISTGKKNDCLVLFDSGKRRFKRKQNIF 329
C G C +H T K F G+RR+ RKQ+ F
Sbjct: 12 CDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGF 49
>AC024206-5|AAF36051.2| 474|Caenorhabditis elegans Hypothetical
protein Y74C9A.5 protein.
Length = 474
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 231 ARHIAAISTGKKNDCLVLFDSGKRRFKRK 317
ARH A+ ++ CL L D +R+F K
Sbjct: 57 ARHYLALMAASRHRCLSLMDHHRRKFLEK 85
>AC006692-8|AAF39973.1| 431|Caenorhabditis elegans Hypothetical
protein T28F12.1 protein.
Length = 431
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 392 FFFFSSYQSIKTHVNTLLSTQKNI-LFSFKSPF--SAIKKHQTV 270
FFF Q I T N + Q N+ +F+FK P +KKHQT+
Sbjct: 8 FFFHFFVQEIHTGKNQI---QHNVTMFNFKFPIFCKKLKKHQTL 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,994,351
Number of Sequences: 27780
Number of extensions: 286183
Number of successful extensions: 778
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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