Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0239.Seq
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23190.1 68417.m03345 protein kinase family protein contains ...    30   0.84 
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein...    29   2.6  
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot...    28   4.5  
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ...    27   7.9  

>At4g23190.1 68417.m03345 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 667

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = -3

Query: 449 VTMESMSAEIFLITHPRVVFFFFSSYQSIKTHVNTLLSTQKNILFSFKSPFSAIKKHQT 273
           +T+ ++ A + L+    V+F    SYQ  KT   + +ST  ++++ FK+  +A  K  T
Sbjct: 294 ITVPTVIAILILLVLGFVLFRRRKSYQRTKTESESDISTTDSLVYDFKTIEAATNKFST 352


>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 579

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 319 KIFFCVDNSVFTWVLILWYELKKKNTTRG*VIKNISADILSIV 447
           KI  CVD++ + W  I+WY  K +N     V +N+  D + I+
Sbjct: 354 KIHQCVDSASYPW--IIWYIWKARNEK---VFENVDKDPMEIL 391


>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
           similar to SP|P22138 DNA-directed RNA polymerase I 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04563; RNA polymerase beta subunit, PF04560: RNA
           polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
           domain 2, PF04565: RNA polymerase Rpb2 domain 3,
           PF00562: RNA polymerase Rpb2 domain 6
          Length = 1114

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 186 DNFLLQKDEVCHGLCARHIAAISTGKKNDCLVLFDSGKRRFKRKQN 323
           D  +L K  V  G+C   I        +D    FDSG + F+R  N
Sbjct: 709 DAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN 754


>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 453

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 213 PRLFAVKNCPRRCGEKTRTFYMTKGLHR 130
           P LF V   P R GEK   +YM  GL R
Sbjct: 118 PVLFNVLGLPMRQGEKPCPYYMQTGLCR 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,796,457
Number of Sequences: 28952
Number of extensions: 247094
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)