Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0238.Seq
         (806 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   6.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.7  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 446 LHFCLKCFFFKNTNSY*FHKISCSYI 523
           LH C   + +  T+ + F  I C +I
Sbjct: 60  LHVCFNSYMYAFTHIFFFFAICCDFI 85


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 803 FFFFLYTPTDLF 768
           F F +YTP DLF
Sbjct: 496 FRFHIYTPEDLF 507


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 600 HDFEKDASYFIAL 562
           HD E DASYF  L
Sbjct: 569 HDGEVDASYFCKL 581


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,256
Number of Sequences: 336
Number of extensions: 3500
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)