Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0238.Seq
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    78   2e-15
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   3.1  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 38/67 (56%), Positives = 48/67 (71%)
 Frame = +3

Query: 57  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 236
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKGKFKWNAWE 59

Query: 237 KLAGTSR 257
           +L G S+
Sbjct: 60  ELKGKSK 66


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 449 HFCLKCFFFKNTNSY*FHKISCSYINERY 535
           H+CLKCF  K   SY  H  +C     RY
Sbjct: 400 HYCLKCFQVKPPRSY--HCGACKRCINRY 426


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 374 VYYINTRAFSHHQRTSDF----FDAIFILHFCLKCFFFKNTNSY 493
           +Y+  T A S  ++   +    FD+ F+  + + CFF  + N++
Sbjct: 54  LYFKLTEAISFTEKCEKYNISLFDSTFVFGYIVNCFFIIHLNTF 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,280
Number of Sequences: 5004
Number of extensions: 59942
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)