Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0238.Seq
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    58   8e-09
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    58   1e-08
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    54   1e-07
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    42   8e-04
08_02_0797 + 21307534-21307639,21307907-21308988,21309385-213094...    29   3.3  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 30/69 (43%), Positives = 41/69 (59%)
 Frame = +3

Query: 51  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 230
           M LQE F+Q A   K L    ++   L LY  +KQATVGD + A RPG+   + +AK+DA
Sbjct: 1   MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59

Query: 231 WHKLAGTSR 257
           W  + G S+
Sbjct: 60  WKAVEGKSK 68


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 42/69 (60%)
 Frame = +3

Query: 51  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 230
           M LQE F++ A  VK L    ++   L LY  +KQATVGD +  +RPG+   + +AK+DA
Sbjct: 1   MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59

Query: 231 WHKLAGTSR 257
           W  + G S+
Sbjct: 60  WKAVEGKSK 68


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/69 (40%), Positives = 40/69 (57%)
 Frame = +3

Query: 51  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 230
           M LQE+F++ A   K L    ++   L LY  +KQATVG      RPG+ +LK + K+DA
Sbjct: 1   MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPV-TTGRPGIFNLKDRYKWDA 59

Query: 231 WHKLAGTSR 257
           W  + G S+
Sbjct: 60  WKAVEGKSK 68


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = +3

Query: 81  AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 242
           AA+  +  ++P  AQL  LY  +K AT G    A +P  L LK +AK++AWHKL
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKL 153


>08_02_0797 +
           21307534-21307639,21307907-21308988,21309385-21309432,
           21309705-21310217
          Length = 582

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 168 DADPANRPGLLDLKGKAKFDAWHKLAGTSRMMPRKP 275
           D  P    G+L   GKA   AW  +AG  R +PR P
Sbjct: 185 DLPPEFHFGMLGWDGKAAGAAWPDVAGDPRAVPRYP 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,795,233
Number of Sequences: 37544
Number of extensions: 360910
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)