Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0238.Seq
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   1e-06
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   29   3.4  
SB_8483| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.7  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = +3

Query: 57  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 236
           +Q+ F QA   V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 237 K 239
           +
Sbjct: 71  Q 71


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 368 YRVYYINTRAFSHHQRTSDFFDAIFI 445
           Y V Y NTRAF  H+R  DF   +F+
Sbjct: 43  YFVAYHNTRAFLRHKREHDFEFQVFV 68


>SB_8483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 368 YRVYYINTRAFSHHQRTSDFFDAIFI 445
           Y V Y NTRAF  H+R  DF   +F+
Sbjct: 43  YFVAYHNTRAFLRHKREHDFEFQVFV 68


>SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 492 IDFIKFHVLTLMNGTSRV 545
           +DF+++HV TL N TSR+
Sbjct: 466 LDFVRYHVPTLNNSTSRI 483


>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 492 IDFIKFHVLTLMNGTSRV 545
           +DF+++HV TL N TSR+
Sbjct: 472 LDFVRYHVPTLNNSTSRI 489


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 304 SYETFDDLDVGFLGIILEVPASLCQASNLALPFKSRRPGLLAGSASPTVACLKWAYKLRS 125
           S   F   D+    + + VP  +    NL   FKS+ P     S       L+W+Y+ R+
Sbjct: 24  SESNFSSFDIILKELYVSVPKGIRTIENLGC-FKSKGPNTTLPSLENIDPALQWSYQQRA 82

Query: 124 WA 119
            A
Sbjct: 83  GA 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,767,524
Number of Sequences: 59808
Number of extensions: 411549
Number of successful extensions: 721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)