Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0238.Seq
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme...    72   4e-13
Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical pr...    65   6e-11
Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical pr...    54   1e-07
Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical pr...    40   0.003
AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical ...    39   0.005
Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    36   0.034

>AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 1 protein.
          Length = 86

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 34/63 (53%), Positives = 45/63 (71%)
 Frame = +3

Query: 69  FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 248
           FD AAA VK LK  P++ +LL LYA FKQ TVGD +  ++PG+ DLKGKAK+ AW +  G
Sbjct: 5   FDDAAATVKTLKTSPSNDELLKLYALFKQGTVGD-NTTDKPGMFDLKGKAKWSAWDEKKG 63

Query: 249 TSR 257
            ++
Sbjct: 64  LAK 66



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 254 EDDAQKAYIEIVEGLIASIG 313
           +DDAQKAY+ +VE LIA  G
Sbjct: 66  KDDAQKAYVALVEELIAKYG 85


>Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical
           protein R06F6.9 protein.
          Length = 385

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 31/70 (44%), Positives = 43/70 (61%)
 Frame = +3

Query: 48  NMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFD 227
           + S Q  F++A  N+K LK  P +   L LY  FKQAT GD     RPG++D  G+AK+D
Sbjct: 22  SFSAQADFEKAQKNLKTLKEEPDNDVKLQLYGLFKQATAGDVQ-GKRPGMMDFVGRAKYD 80

Query: 228 AWHKLAGTSR 257
           AW+ L G ++
Sbjct: 81  AWNTLKGQTQ 90


>Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical
           protein F47B10.7 protein.
          Length = 116

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
 Frame = +3

Query: 51  MSLQEKFDQAAANVKNL-KALP---TDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKA 218
           MSLQEKFD A   ++ L K  P   ++ Q L  Y+ FKQA++GD +  +RPG+  +  + 
Sbjct: 1   MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVN-TDRPGIFSIIERK 59

Query: 219 KFDAWHKLAGTSR 257
           K+D+W +L G S+
Sbjct: 60  KWDSWKELEGVSQ 72


>Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical
           protein C18D11.2 protein.
          Length = 266

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +3

Query: 129 LNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 242
           LN YA FKQAT G  D   +P   D++G  K++AW+KL
Sbjct: 28  LNFYALFKQATHGKCD-LPKPSFYDIQGVYKWNAWNKL 64


>AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical
           protein Y17G7B.1 protein.
          Length = 115

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 69  FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDA--DPANRPGLLDLKGKAKFDAWHKL 242
           F+ AA  ++ LK+ PTD + L LYA +KQA  GD   +        D  G+ K+ AW   
Sbjct: 15  FEIAAEEMRRLKSEPTDRERLKLYALYKQALHGDIPNEDVYPVPAGDEVGRKKYAAWKSQ 74

Query: 243 AGTS 254
            G +
Sbjct: 75  KGAN 78


>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 45  INMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKF 224
           I+  L+ KFD A   +           +L  Y  +KQA  G AD    P   +   + KF
Sbjct: 24  IDTLLEAKFDAATTRLPGFLTKIDQKTILKFYGLYKQAVEGPADSKKGPYWFETVARKKF 83

Query: 225 DAW 233
           ++W
Sbjct: 84  NSW 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,015
Number of Sequences: 27780
Number of extensions: 326827
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)