Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0238.Seq
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic... 60 2e-09
At3g13620.1 68416.m01714 amino acid permease family protein weak... 29 4.8
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 29 4.8
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 29 4.8
At2g01320.4 68415.m00049 ABC transporter family protein 28 6.3
At2g01320.3 68415.m00047 ABC transporter family protein 28 6.3
At2g01320.2 68415.m00046 ABC transporter family protein 28 6.3
At2g01320.1 68415.m00048 ABC transporter family protein 28 6.3
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR... 28 8.4
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR... 28 8.4
At2g33250.1 68415.m04073 expressed protein 28 8.4
>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
to acyl-CoA-binding protein (ACBP) [Arabidopsis
thaliana] SWISS-PROT:P57752
Length = 92
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +3
Query: 51 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 230
M L+E+F++ A V L LP++ LL LY +KQA G D +RPG+ +K +AK+DA
Sbjct: 1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59
Query: 231 WHKLAGTS 254
W + G S
Sbjct: 60 WKAVEGKS 67
>At3g13620.1 68416.m01714 amino acid permease family protein weak
similarity to SP|Q9WTR6 Cystine/glutamate transporter
(Amino acid transport system xc-) {Mus musculus};
contains Pfam profile PF00324: Amino acid permease
Length = 478
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 142 AYKLRSWASVGRAFRFFTLAAAWSNFSWRDILI 44
AY+L A +G +FF + + W N W ILI
Sbjct: 314 AYQLEGMAELGFLPKFFGVRSKWFNTPWVGILI 346
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 72 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 242
D +A NV + P D LL LYA ++QATVG + +P ++K+ +W L
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGL 81
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 72 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 242
D +A NV + P D LL LYA ++QATVG + +P ++K+ +W L
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGL 81
>At2g01320.4 68415.m00049 ABC transporter family protein
Length = 725
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 165 GDADPANRPGLLDLKGKAKFDAWHKLAGTSRMMPRKPTSRSSKVS*LPSASKNKRLNF 338
G+A P ++ G K + LAG + PR S +V+ PS+SK +L F
Sbjct: 96 GEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAF 153
>At2g01320.3 68415.m00047 ABC transporter family protein
Length = 728
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 165 GDADPANRPGLLDLKGKAKFDAWHKLAGTSRMMPRKPTSRSSKVS*LPSASKNKRLNF 338
G+A P ++ G K + LAG + PR S +V+ PS+SK +L F
Sbjct: 96 GEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAF 153
>At2g01320.2 68415.m00046 ABC transporter family protein
Length = 727
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 165 GDADPANRPGLLDLKGKAKFDAWHKLAGTSRMMPRKPTSRSSKVS*LPSASKNKRLNF 338
G+A P ++ G K + LAG + PR S +V+ PS+SK +L F
Sbjct: 96 GEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAF 153
>At2g01320.1 68415.m00048 ABC transporter family protein
Length = 725
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 165 GDADPANRPGLLDLKGKAKFDAWHKLAGTSRMMPRKPTSRSSKVS*LPSASKNKRLNF 338
G+A P ++ G K + LAG + PR S +V+ PS+SK +L F
Sbjct: 96 GEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAF 153
>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
(DsRBD)-containing protein weak similarity to SP|P19525
Interferon-induced, double-stranded RNA-activated
protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
Pfam profile PF00035: Double-stranded RNA binding motif
Length = 355
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +3
Query: 45 INMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKF 224
IN++L E + N L AL TD +N+ A+ P N ++ L A
Sbjct: 220 INVALNEP--ENPTNDGTLSALTTDGMKMNI------ASSSLPIPHNPTNVITLNAPAAN 271
Query: 225 DAWHKLAGTSRMMPRKPTSRSSKVS 299
+A S MP+ PT+ S+ S
Sbjct: 272 GIKRNIAACSSWMPQNPTNDGSETS 296
>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
(DsRBD)-containing protein weak similarity to SP|P19525
Interferon-induced, double-stranded RNA-activated
protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
Pfam profile PF00035: Double-stranded RNA binding motif
Length = 355
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +3
Query: 45 INMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKF 224
IN++L E + N L AL TD +N+ A+ P N ++ L A
Sbjct: 220 INVALNEP--ENPTNDGTLSALTTDGMKMNI------ASSSLPIPHNPTNVITLNAPAAN 271
Query: 225 DAWHKLAGTSRMMPRKPTSRSSKVS 299
+A S MP+ PT+ S+ S
Sbjct: 272 GIKRNIAACSSWMPQNPTNDGSETS 296
>At2g33250.1 68415.m04073 expressed protein
Length = 299
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 216 AKFDAWHKLAGTSRMMPRKPTSRSSKVS*LPSASKNKR 329
+KF W +L G +P +PTS K LP + +R
Sbjct: 236 SKFGGWDELDGLGTTIPERPTSEPKKKP-LPKRKRVRR 272
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,483,217
Number of Sequences: 28952
Number of extensions: 298864
Number of successful extensions: 699
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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