Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0237.Seq
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             110   9e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   8e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   9e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 74   8e-14
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.075
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.13 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.30 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.6  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.6  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   2.1  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)            28   6.5  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   8.6  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               27   8.6  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)                      27   8.6  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  110 bits (264), Expect = 9e-25
 Identities = 49/82 (59%), Positives = 63/82 (76%)
 Frame = +1

Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
           + L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTR
Sbjct: 3   VGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTR 62

Query: 436 EHALLAFTLGVKQLIVGVNKMD 501
           EHA+L  +LGV QLIV +NK+D
Sbjct: 63  EHAILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  100 bits (240), Expect = 8e-22
 Identities = 43/77 (55%), Positives = 58/77 (75%)
 Frame = +1

Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 450
           F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276

Query: 451 AFTLGVKQLIVGVNKMD 501
           A T GVK L++ VNKMD
Sbjct: 277 AKTAGVKHLVILVNKMD 293



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +3

Query: 120 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 33.9 bits (74), Expect = 0.099
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +3

Query: 516 YSEPRFEEIKKEVSSYIKKIGYNP 587
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 36  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +1

Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 357
           IALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 27  IALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 180 MGKGSFKYAWVLDKLKAERE 239
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +1

Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 471
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 472 QLIVGVNKMD 501
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 301 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 480
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 481 VGVNKMD 501
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 36  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 298 IIDAPGHRDFIKNMITGTSQADCAVLIV 381
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 51  THINIVVIGHVDSGKSTTTGHLIY 122
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +1

Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
           I  +  +     +  +D PGH  F      G    D  +++VAA             QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180

Query: 436 EHALLAFTLGVKQLIVGVNKMD 501
           E    A   GV  +I  +NK+D
Sbjct: 181 EAISHAQAAGV-PIIFAINKID 201


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 60   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 158
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)
          Length = 565

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 584 VVANLLDV*GYFLLDFLKSGLTVWWSVESI 495
           V+  + +  G+ L +F+K G+ VW++V++I
Sbjct: 215 VLTRMRETGGFCLPEFVKRGVNVWFAVDNI 244


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 415 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTDHHTVSPDLRKSRRKYPHTSR 570
           +K   T+ H +  +T   +       K  +T  HT+ P   K     PHT++
Sbjct: 19  TKTHTTKPHNIKLYTTKPRTTKPHTTKPHTTKPHTIKPHTTKPHTTKPHTTK 70


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +1

Query: 343 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTDHHTV 522
           TGT+  D  + +     G+F++ ++ N  +    LLA  +G+ +   G+    +   HT 
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848

Query: 523 S 525
           +
Sbjct: 849 A 849


>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 490

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 447 ARFHPRCQTAHRRSKQNGFH*PPYSEPRFEEIKK 548
           A F PR +  +R  ++N  H  PYS+   EE +K
Sbjct: 118 ADFAPRARQPNREHRENERHNRPYSQGYHEEERK 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,359,573
Number of Sequences: 59808
Number of extensions: 378496
Number of successful extensions: 1009
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)