Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0236.Seq
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   1.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   1.5  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   2.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   2.6  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   3.4  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   4.5  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   4.5  
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    25   4.5  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   4.5  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   4.5  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    24   7.9  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    24   7.9  

>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 NTTNTLKDEWFSKFFPERNEFIKIRKETR 212
           NTTN   + W +   P+R++ IKI + T+
Sbjct: 4   NTTNLRNECWDTFSIPKRSQNIKINQSTK 32


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 75   LNGSLNDNDFKIIDDHKNTTNTLKD 149
            LN SLN+N F ++D+H+      K+
Sbjct: 1714 LNFSLNNNMFDLVDEHEERPKNRKE 1738


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 72  TLNGSLNDNDFKIIDDHKNT 131
           T+ G+LN+ +F ++D+HK T
Sbjct: 331 TIYGALNEPNFFVLDEHKIT 350


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 258 KLFENKDDTNNFKHSPCDLKNVKTII 335
           + F+ +D    FK+S C L  ++TI+
Sbjct: 162 QFFKLQDSLRKFKNSECSLSELQTIV 187


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 97 LSFKDPFKVSFWKSRP*SILKH 32
          LS K+P  VSFW + P  I++H
Sbjct: 39 LSRKNPSNVSFWSNEP--IIRH 58


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 9   KKQSDLPKCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTN 137
           KKQ D+    NI      +++    S+  ++ +++DD+ N+ N
Sbjct: 26  KKQMDVDTDRNIVLNGRLESQIAKLSVPPHEMRVVDDYSNSKN 68


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 124 KTQLTLSKTNGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNEN 261
           K+ L LS  +  +N  L+   SS+S          NI+ N + NEN
Sbjct: 51  KSTLLLSGPSPIRNIQLSATKSSESNSIDYLTDTQNIFPNFVNNEN 96


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 175 NGMNSSKSEKKPDQKFENNIYSNTLTNENYLKTK 276
           NG+NS    K+    +EN++ +  LT   Y  T+
Sbjct: 146 NGINSLIGYKRQKHGWENSVAAGALTGALYKSTR 179


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 57  DFQNETLNGSLNDNDFKIIDDHKNTTNTLKDEWFSKFFPERN-EFIKIRKETRS 215
           +F N  L+ S ND+ F++ D    +++ LK +   K  P+ + EF    KE ++
Sbjct: 781 EFSNLILSPSSNDDSFQLDDLLSPSSSNLKQQ-IQKVVPQNSLEFSVGEKEKKA 833


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 220 FENNIYSNTLTNENYLK 270
           FEN++  N +  ENYLK
Sbjct: 84  FENDLSDNDMPKENYLK 100


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 150 EWFSKFFPERNEFIKIRKE 206
           EW S  F ER  F+K  KE
Sbjct: 40  EWKSTSFAERRNFLKALKE 58


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 243 YID*RKLFENKDDTNNFKHSPCD 311
           YID  +++++ DDTN+  H  CD
Sbjct: 566 YIDYIRIYQDPDDTNS--HIGCD 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,703
Number of Sequences: 5004
Number of extensions: 24149
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)