Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0236.Seq
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410...    27   4.2  
01_06_0460 + 29545030-29546377,29546463-29547085                       26   9.8  

>02_05_0076 +
           25637752-25639062,25639221-25639297,25640962-25641095,
           25641178-25641242,25641431-25641482,25641912-25641994,
           25642128-25642221,25642332-25642861
          Length = 781

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 172 LNGMNSSKSEKKPDQKFENNIYSNTLTNEN 261
           L+G    K ++ PD + ++NI  NT  N N
Sbjct: 689 LSGSELDKDQEMPDAQHQSNIIRNTNPNHN 718


>01_06_0460 + 29545030-29546377,29546463-29547085
          Length = 656

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 54  LDFQNETLNGSLNDNDFKIIDDHKNTTNTLKDEWFSKFFPE 176
           L  +N +  GSL D DF  +  H      L    FS  FPE
Sbjct: 108 LSLKNNSFTGSLGDVDFSTLAPHLKLL-YLSGNGFSGRFPE 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,888,974
Number of Sequences: 37544
Number of extensions: 106735
Number of successful extensions: 243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)