Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0236.Seq
(353 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_26061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05) 28 1.9
SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 28 2.5
SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96) 27 3.3
SB_40144| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-14) 27 3.3
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09) 27 3.3
SB_35221| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12) 27 4.4
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 27 4.4
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 27 5.8
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 26 7.7
SB_44448| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14) 26 7.7
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29) 26 7.7
SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29) 26 7.7
SB_24408| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-17) 26 7.7
SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27) 26 7.7
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 26 7.7
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 26 7.7
>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +1
Query: 142 SKTNGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNENYLKTKMILTISNTRHVT 312
S +GF NS N N+ D+K NN T T + T TI+ T
Sbjct: 380 SNNDGFDNSIRNDNNAGNKSNNKDEK--NNSKGTTTTTKTITTTATTTTITTAMATT 434
>SB_26061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 123 YGHQLF*NHCHLRIRSKFHSGNLGRNRY*NILVNQIVFSY 4
Y H L NH H+ R+ H R + NI V+Q+ +Y
Sbjct: 11 YTHILTHNHAHVHARTNTHMHANSRRLHANIYVSQLTSTY 50
>SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
Length = 256
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 341 YVNDCLNIL*VTWRVFEIVSIIFVFK 264
Y N C+NI+ WRV E ++F K
Sbjct: 183 YFNSCINIVVYAWRVPEFKKVLFRHK 208
>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 291 NC*YHLCFQIIFVSQCIRV 235
NC HLC +++F CIRV
Sbjct: 639 NCSIHLCIRVLFNPLCIRV 657
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 118 TIKTQLTLSKTNGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNENYL 267
TI T + + NS +N + + + +Q F N+ S+ +TNE Y+
Sbjct: 870 TITTTEEVCRMTCKSNSTCYSINYIRQKLEENQHFRGNVKSSRVTNEKYV 919
>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
Length = 772
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 118 TIKTQLTLSKTNGFQNSFLNGMNSSKSE 201
++ L+ S TNGF +S NGM+ S S+
Sbjct: 251 SLSNGLSSSMTNGFSSSLSNGMSPSLSQ 278
>SB_40144| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-14)
Length = 341
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 341 YVNDCLNIL*VTWRVFEIVSIIFVFK 264
Y N C+NI+ WR+ E ++F K
Sbjct: 261 YSNSCINIVVYAWRIPEFKQVLFRHK 286
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 341 YVNDCLNIL*VTWRVFEIVSIIFVFK 264
Y N C+NI+ WR+ E ++F K
Sbjct: 519 YSNSCINIVVYAWRIPEFKQVLFRHK 544
>SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)
Length = 334
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 341 YVNDCLNIL*VTWRVFEIVSIIFVFK 264
Y N C+NI+ WR+ E ++F K
Sbjct: 261 YSNSCINIVVYAWRIPEFKQVLFRHK 286
>SB_35221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 118 TIKTQLTLSKTNGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNENY 264
T Q+T GFQ S+ + + K EKK ++ + N + + Y
Sbjct: 256 TYNYQITYWVQEGFQESYADPQSLQKLEKKIERDYVNRLQTQCYRERQY 304
>SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
Length = 556
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 341 YVNDCLNIL*VTWRVFEIVSIIFVFK 264
Y N C+NI WRV E ++F K
Sbjct: 489 YFNSCINIQVYAWRVPEFKKVLFRHK 514
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 39 NIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTN 137
++DY D + G + NDF+ DD KN TN
Sbjct: 844 DVDYDNDAKYNYAAGDEDYNDFEDEDDDKNCTN 876
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 118 TIKTQLTLSKTNGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNEN 261
T Q ++S +N NS N ++S S + NN +N N N
Sbjct: 550 TATVQYSISISNSNSNSNSNSNSNSNSNNNSNSNSNNNSNNNNNNNSN 597
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 142 SKTNGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNEN 261
S +N NS N N+S S + NN SN+ +N N
Sbjct: 564 SNSNSNSNSNSNSNNNSNSNSNNNSNNNNNNNSNSNSNSN 603
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 27 PKCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNT 140
PK D G +F N LN +N+ KI T T
Sbjct: 305 PKKIVCDNGTEFSNAMLNSFCEENNIKICHGSARTPTT 342
>SB_44448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 121 IKTQLTLSKTNGFQNSFLNGMNSSKSEKKPDQKFENNIY 237
+K+ + +S LN S K++ K D F+NN++
Sbjct: 85 VKSNMAAPLKQKILSSVLNWKLSIKTDNKKDDSFKNNVF 123
>SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)
Length = 596
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 341 YVNDCLNIL*VTWRVFEIVSIIFVFK 264
Y N C+NI+ WR+ E + F K
Sbjct: 523 YSNSCINIVVYAWRIPEFRQVFFRHK 548
>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 324
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 27 PKCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNT 140
PK D G +F N LN +N+ KI T T
Sbjct: 224 PKKIVCDNGTEFSNAMLNSFCEENNIKICHGSARTPTT 261
>SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)
Length = 324
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 27 PKCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNT 140
PK D G +F N LN +N+ KI T T
Sbjct: 224 PKKIVCDNGTEFSNAMLNSFCEENNIKICHGSPRTPTT 261
>SB_24408| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-17)
Length = 439
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 341 YVNDCLNIL*VTWRVFEIVSIIFVFK 264
Y N C+NI+ WR+ E + F K
Sbjct: 326 YSNSCINIVVYAWRIPEFRQVFFRHK 351
>SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 27 PKCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNT 140
PK D G +F N LN +N+ KI T T
Sbjct: 270 PKKIVCDNGTEFSNAMLNSFCEENNIKICHGSARTPTT 307
>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
Length = 1068
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 27 PKCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNT 140
PK D G +F N LN +N+ KI T T
Sbjct: 405 PKKIVCDNGTEFSNAMLNSFCEENNIKICHGSARTPTT 442
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 39 NIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNTLKDEW 155
NID G + + + NG+ N+ D DD TT T K+++
Sbjct: 184 NIDDGNNVDDRSSNGNNNNVDQDNNDDETITTTTNKNKY 222
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 163 NSFLNGMNSSKSEKKPDQKFENNIYSN 243
NS L+ +NSS E P E+N++ N
Sbjct: 726 NSLLDDINSSTPETLPGVYLESNVFQN 752
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,800,529
Number of Sequences: 59808
Number of extensions: 142372
Number of successful extensions: 627
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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