Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0236.Seq
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    30   0.53 
Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z81534-1|CAB04346.1|  284|Caenorhabditis elegans Hypothetical pr...    29   0.93 
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    29   0.93 
Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z70310-2|CAA94367.1|  462|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z11126-3|CAA77474.2|  487|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U80029-7|ABC71799.1|  201|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U23179-1|AAY55860.1|  334|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC006607-3|AAK68172.1|  408|Caenorhabditis elegans Prion-like-(q...    26   8.7  

>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
            protein C33E10.6 protein.
          Length = 1014

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +3

Query: 123  KNTTNTLKDEWFSKFFPERNEFIKIRKETRSKV*K*HLL*YID*RKLFENKDDTNNFKHS 302
            KN TNTL  E F +   +     K +   R+K    H +  I   K+  N+DD + FK  
Sbjct: 938  KNVTNTLTIEDFKRCLFQNEIIRKTQYMIRAKK---HKIYTIKQNKVALNEDDMDEFKRY 994

Query: 303  PCDLK 317
             CD K
Sbjct: 995  ICDNK 999


>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical
           protein DY3.7 protein.
          Length = 922

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 276 DDTNNFKHSPCDLKNVKTIIDVYSKA 353
           D  NN K SPC +KN+  ++ V  K+
Sbjct: 461 DKPNNGKFSPCSVKNISAVLAVVLKS 486


>Z81534-1|CAB04346.1|  284|Caenorhabditis elegans Hypothetical
           protein F37H8.1 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 30  KCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNTLKDEWFS---KFFPE 176
           KC   DY LD++  T+           I  H  T N +K EW +   K FPE
Sbjct: 225 KCKQCDY-LDYRKSTMRKHTVSQHGSDIPPHNITDNIMKAEWHAAMIKCFPE 275


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.
          Length = 922

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 276 DDTNNFKHSPCDLKNVKTIIDVYSKA 353
           D  NN K SPC +KN+  ++ V  K+
Sbjct: 461 DKPNNGKFSPCSVKNISAVLAVVLKS 486


>Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical
           protein W07G4.5b protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 57  DFQNETLNGSLNDNDFKIIDDHKNTTNTLKDEW 155
           DF+ E +N   + + FK ID      N+   +W
Sbjct: 283 DFEREDINTECSSDSFKFIDVISKLQNSENSKW 315


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 57  DFQNETLNGSLNDNDFKIIDDHKNTTNTLKDEW 155
           DF+ E +N   + + FK ID      N+   +W
Sbjct: 335 DFEREDINTECSSDSFKFIDVISKLQNSENSKW 367


>Z70310-2|CAA94367.1|  462|Caenorhabditis elegans Hypothetical
           protein R11A8.2 protein.
          Length = 462

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 93  DNDFKIIDDHKNTTNTLKDEWFSKFFP 173
           DND  I DD  NT   ++  W     P
Sbjct: 375 DNDVTIEDDRGNTHYNIRQSWLETVIP 401


>Z11126-3|CAA77474.2|  487|Caenorhabditis elegans Hypothetical
           protein ZK643.5 protein.
          Length = 487

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 163 NSFLNGMNSSKSEKKPDQKFENNIYSNTLTNEN 261
           N+FLN    SKS  +  +K  ++ YS+T ++ +
Sbjct: 232 NAFLNNTTKSKSRGRDTRKRRSSSYSSTSSSSD 264


>U80029-7|ABC71799.1|  201|Caenorhabditis elegans Hypothetical
           protein T20D4.10 protein.
          Length = 201

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 121 WSSIILKSLSFKDPFKVSFWKSRP*SILKHFGKSDC 14
           W  +  K     DP KV+  KSR  +  ++FGK DC
Sbjct: 129 WDPMPDKLQDETDPIKVA--KSRSETCKRYFGKDDC 162


>U23179-1|AAY55860.1|  334|Caenorhabditis elegans Hypothetical
           protein C27D6.11 protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 126 NTTNTL-KDEWFSKFFPERNEFIKIRK 203
           N T+T  KD++  KF P   E +K+ K
Sbjct: 71  NITSTREKDDYIKKFLPREKEIVKLLK 97


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 118 TIKTQLTLSKTNGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNE 258
           T+K   T  K   F+    NG + S+ EK  DQ+   N +  TLT+E
Sbjct: 490 TVKPSAT-EKEKVFEKLSANGEDYSR-EKAADQESTGNHFFRTLTSE 534


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 175 NGMNSSKSEKKPDQKFEN 228
           NG+ SSKS++KPD   +N
Sbjct: 181 NGVKSSKSDEKPDFSAQN 198


>AC006607-3|AAK68172.1|  408|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 10
           protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 148 TNGFQNS---FLNGMNSSKS--EKKPDQKFENNIYS-NTLTNENYLKTK 276
           TN FQNS    LN  N+ K+   +   Q F NN  + N   N NY  T+
Sbjct: 152 TNAFQNSQPMSLNNGNTMKAYGRRSTAQNFNNNNNNMNNNQNHNYAPTR 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,966,087
Number of Sequences: 27780
Number of extensions: 125335
Number of successful extensions: 475
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)