Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0236.Seq
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.26 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   1.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   3.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   4.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   4.3  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   4.3  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   4.3  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   4.3  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   4.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   7.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   7.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   7.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   7.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   9.9  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    20   9.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           20   9.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 24  LPKCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNTLK 146
           L  C N  YGL+   + + GS+++ D    +DH N T   K
Sbjct: 172 LDDCDNDTYGLEMSVDFIKGSISNIDG--AEDHCNKTAVRK 210


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 199 EKKPDQKFENNIYSNTLTNENYLKTKMILTISNTRHV 309
           E+  + K  +++ +NT+ N NY K K+   I N   +
Sbjct: 307 ERSREPKIISSLSNNTIHNNNYNK-KLYYNIINIEQI 342


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = +1

Query: 151 NGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNENYL 267
           +   N  ++  N+ K        + NN Y+  L  +NY+
Sbjct: 83  SSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYI 121


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 SKSEKKPDQKFENNIYSNTLTNENY 264
           ++ E+  + K  +++ +NT+ N NY
Sbjct: 70  TERERSREPKIISSLSNNTIHNNNY 94


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 SKSEKKPDQKFENNIYSNTLTNENY 264
           ++ E+  + K  +++ +NT+ N NY
Sbjct: 70  AERERSREPKIISSLSNNTIHNNNY 94


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 SKSEKKPDQKFENNIYSNTLTNENY 264
           ++ E+  + K  +++ +NT+ N NY
Sbjct: 71  TERERSREPKIISSLSNNTIHNNNY 95


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 SKSEKKPDQKFENNIYSNTLTNENY 264
           ++ E+  + K  +++ +NT+ N NY
Sbjct: 71  TERERSREPKIISSLSNNTIHNNNY 95


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 SKSEKKPDQKFENNIYSNTLTNENY 264
           ++ E+  + K  +++ +NT+ N NY
Sbjct: 71  TERERSREPKIISSLSNNTIHNNNY 95


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 SKSEKKPDQKFENNIYSNTLTNENY 264
           ++ E+  + K  +++ +NT+ N NY
Sbjct: 71  TERERSREPKIISSLSNNTIHNNNY 95


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 202 KKPDQKFENNIYSN 243
           ++P  KFE N YS+
Sbjct: 360 RRPQYKFETNRYSS 373


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 202 KKPDQKFENNIYSN 243
           ++P  KFE N YS+
Sbjct: 360 RRPQYKFETNRYSS 373


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 220 FENNIYSNTLTNENY 264
           + NN Y+N   N NY
Sbjct: 333 YNNNNYNNNNYNNNY 347


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 214 QKFENNIYSNTLTNENYLKTKMILTISNTR 303
           QKF NN Y+    N   L   +   I NTR
Sbjct: 553 QKFINNDYNFNEVNFRILGANVNDLIMNTR 582


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 63  QNETLNGSLNDNDFKIIDDHKNTTN 137
           QN+ +  + N ND    ++ KN  N
Sbjct: 419 QNDNIQNTNNQNDNNQKNNKKNANN 443


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 108 IIDDHKNTTNTLKDEWFSKFFPERNEFIKIRK 203
           ++D+H N TN+      ++ + E N  IK  K
Sbjct: 274 LMDEHSNRTNSDPRMILTEAYTEFNLTIKYYK 305


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 264 FENKDDTNNFKHSPCDLKNVK 326
           FEN++  +  +   CDL + K
Sbjct: 32  FENEERADRHRRVTCDLLSFK 52


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 264 FENKDDTNNFKHSPCDLKNVK 326
           FEN++  +  +   CDL + K
Sbjct: 32  FENEERADRHRRVTCDLLSFK 52


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 264 FENKDDTNNFKHSPCDLKNVK 326
           FEN++  +  +   CDL + K
Sbjct: 7   FENEERADRHRRVTCDLLSFK 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,353
Number of Sequences: 438
Number of extensions: 1793
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)