BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0236.Seq (353 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g17250.1 68414.m02101 leucine-rich repeat family protein cont... 31 0.17 At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 27 2.7 At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF... 27 2.7 At2g17036.1 68415.m01966 F-box family protein ; similar to SKP1... 27 2.7 At4g12350.1 68417.m01953 transcription factor, putative (MYB42) ... 27 3.6 At5g23350.1 68418.m02731 GRAM domain-containing protein / ABA-re... 27 4.7 At3g57400.1 68416.m06390 expressed protein 27 4.7 At3g26840.1 68416.m03357 esterase/lipase/thioesterase family pro... 27 4.7 At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 26 6.3 At2g01880.1 68415.m00121 purple acid phosphatase (PAP7) identica... 26 6.3 At5g23360.1 68418.m02732 GRAM domain-containing protein / ABA-re... 26 8.3 At5g06730.1 68418.m00761 peroxidase, putative similar to peroxid... 26 8.3 >At1g17250.1 68414.m02101 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593 Length = 756 Score = 31.5 bits (68), Expect = 0.17 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -2 Query: 322 TFFKSHGECLKLLVSSLFSNNFR*SMY*SKCYFQ-TFDLVSFRILMNSF 179 TF C + + L SN + + S + Q TFDL+SF + NSF Sbjct: 166 TFRNGSNRCFPIRIVDLSSNFLQGEILPSSIFMQGTFDLISFNVSKNSF 214 >At5g49530.1 68418.m06130 SIN-like family protein low similarity to Sex-lethal interactor [Drosophila melanogaster] GI:6049274; contains Pfam profile PF04801: Sin-like protein conserved region Length = 689 Score = 27.5 bits (58), Expect = 2.7 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 142 RVLVVFLWSSIILKSLSFKDPFKVSFWKSRP 50 R+L F +LK FK+P VSF KS P Sbjct: 435 RMLTEFAKERHVLKDWKFKEPTDVSFIKSYP 465 >At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF02984: Cyclin, C-terminal domain Length = 1025 Score = 27.5 bits (58), Expect = 2.7 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 30 KCFNIDYGLDFQNETLNGSLNDNDFKIIDDHK 125 K FN+ DF TL G D ++DDHK Sbjct: 724 KAFNLFSLADFTKVTLQGPRLDPFLNLVDDHK 755 >At2g17036.1 68415.m01966 F-box family protein ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 428 Score = 27.5 bits (58), Expect = 2.7 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -2 Query: 238 SKCYFQTFDLVSFRILMNSFRS 173 SKC +FDL+ FR + +S+RS Sbjct: 15 SKCLESSFDLIQFRSVCSSWRS 36 >At4g12350.1 68417.m01953 transcription factor, putative (MYB42) identical to cDNA putative transcription factor (MYB42) GI:5823330 Length = 168 Score = 27.1 bits (57), Expect = 3.6 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +3 Query: 24 LPKCFNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNTLKD 149 L K F D L ++ET + + N ND KI++ TTNT+ D Sbjct: 11 LNKVFT-DTNLVDKSETSSKADNVNDNKIVEIDGTTTNTIDD 51 >At5g23350.1 68418.m02731 GRAM domain-containing protein / ABA-responsive protein-related contains similarity to ABA-responsive protein in barley (GI:4103635) [Hordeum vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam PF02893: GRAM domain Length = 280 Score = 26.6 bits (56), Expect = 4.7 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +1 Query: 172 LNGMNSSKSEKKPDQKF 222 +NG+N S++ KKP QK+ Sbjct: 229 INGVNQSQNTKKPSQKY 245 >At3g57400.1 68416.m06390 expressed protein Length = 474 Score = 26.6 bits (56), Expect = 4.7 Identities = 8/22 (36%), Positives = 15/22 (68%) Frame = +3 Query: 90 NDNDFKIIDDHKNTTNTLKDEW 155 ND+ K++D H+N++N + W Sbjct: 188 NDSFLKLVDVHRNSSNQIDSVW 209 >At3g26840.1 68416.m03357 esterase/lipase/thioesterase family protein contains Pfam profile PF03096: Ndr family Length = 701 Score = 26.6 bits (56), Expect = 4.7 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = +3 Query: 144 KDEWFSKFFPERNEFIKIRKETRSKV 221 K E + F+PER+EF+++ + +K+ Sbjct: 535 KGEEYKLFWPERSEFVRVASKFGAKI 560 >At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1038 Score = 26.2 bits (55), Expect = 6.3 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 39 NIDYGLDFQNETLNGSLNDNDFK 107 N D+ L+ QN+ L+ LN ND K Sbjct: 253 NYDWKLNLQNQLLSKILNQNDVK 275 >At2g01880.1 68415.m00121 purple acid phosphatase (PAP7) identical to purple acid phosphatase (PAP7) GI:20257476 from [Arabidopsis thaliana]; contains Pfam profile: PF00149 calcineurin-like phosphoesterase Length = 328 Score = 26.2 bits (55), Expect = 6.3 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 36 FNIDYGLDFQNETLNGSLNDNDFKIIDDHKNTTNTLKDEWFS 161 F I G +F ++ L G +ND F+ H T +L+ +W+S Sbjct: 75 FVISVGDNFYDDGLKG-VNDPSFEASFSHIYTHPSLQKQWYS 115 >At5g23360.1 68418.m02732 GRAM domain-containing protein / ABA-responsive protein-related contains similarity to ABA-responsive protein in barley (GI:4103635) [Hordeum vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam PF02893: GRAM domain] Length = 210 Score = 25.8 bits (54), Expect = 8.3 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 172 LNGMNSSKSEKKPDQKFENNIYSNTLTNENY 264 +NG+N S++ KKP Q+ Y +T +NY Sbjct: 159 INGVNQSQNTKKPSQR-----YLEVVTVDNY 184 >At5g06730.1 68418.m00761 peroxidase, putative similar to peroxidase [Arabidopsis thaliana] gi|1491617|emb|CAA68212 Length = 358 Score = 25.8 bits (54), Expect = 8.3 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = +1 Query: 127 TQLTLSKTNGFQNSFLNGMNSSKSEKKPDQKFENNIYSNTLTNENYLKTKMIL 285 T L LS + F N++ + S+ + DQ+ +N S T+ N + L Sbjct: 249 TNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSNTGSATVPIVNSFASNQTL 301 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,354,092 Number of Sequences: 28952 Number of extensions: 108977 Number of successful extensions: 369 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 363 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 369 length of database: 12,070,560 effective HSP length: 72 effective length of database: 9,986,016 effective search space used: 449370720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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