Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0235.Seq
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.11 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    26   0.34 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    26   0.34 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    24   1.4  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   1.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.4  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   7.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 490  WARLRVAWCRPLLCWSHSASVCRWAQE 570
            W +  V  C P L W ++ ++C W ++
Sbjct: 1299 WGKYEVFNCAPGLHWDNNKNICDWPEK 1325



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 499  LRVAWCRPLLCWSHSASVCRW 561
            LR  +C   L W+    +C W
Sbjct: 1126 LRKQYCAGGLHWNKERKICDW 1146


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 514 CRPLLCWSHSASVCRWAQEPP 576
           C P L +   A VC WA + P
Sbjct: 124 CSPGLAYDREARVCMWADQVP 144


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 514 CRPLLCWSHSASVCRWAQEPP 576
           C P L +   A VC WA + P
Sbjct: 124 CSPGLAYDREARVCMWADQVP 144



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 625 TRKKANGSAPKSCPAAQAAPAP 560
           + + A  S P+  PA++ AP P
Sbjct: 249 SHQPATKSKPRPAPASRNAPEP 270


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 441 LQRRQRRHTHLPSSRYYFLCHKVIFSEIVREHGKSSCFLDSATPDQGRHADVTID 277
           L R   ++T  P  R   L H ++   +   HG  +  +DS   D  ++  V+ID
Sbjct: 127 LTRETAKNTSHPFQRV--LVHDILQPGVKGLHGPITRVIDSKVVDSRKNTTVSID 179


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 529 CWSHSASVCRWAQEPPG 579
           CW+ + S+ +W Q+  G
Sbjct: 371 CWNSTPSIVQWMQDQKG 387


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 190 IREGHLVNDRDVLFQVLHHVEQGIVSHSD 104
           I  GHL  D D + QVL  +   ++  +D
Sbjct: 333 IFNGHLNPDNDEVLQVLEDIYSDLLDLTD 361


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 690 EVNHSAPTVTLTSPRETTLTHAL 622
           EVNHSAP  T    +      AL
Sbjct: 234 EVNHSAPITTCNKKQHLESPSAL 256


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 258 RSRFSRHQLSRRHVDLDPALRY 323
           +S F + Q      DL+PAL+Y
Sbjct: 33  KSHFRQGQAKFEITDLEPALQY 54


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 255 PRSRFSRHQLSRR 293
           P +RF+RH + RR
Sbjct: 265 PSNRFTRHLIQRR 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,585
Number of Sequences: 336
Number of extensions: 3432
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)