Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0235.Seq
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   1.5  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   2.6  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    26   4.5  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   4.5  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   6.0  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 71  KYPLIVISDAGIRMRDDTLLDMVQHLKENVAIVHQMPFAYDAEGF-AAVYEKVYFGTSQA 247
           K   I+ S+ G+ + +D + D +   KE      +     +  G       K Y  T Q+
Sbjct: 34  KVEAILNSELGLAILNDRIKDYLLTCKELAGFFKKRSILEEESGKNLQKLAKSYLETFQS 93

Query: 248 RMSSEPIFSASIVTS 292
           +  S   FSAS++TS
Sbjct: 94  KHHSPQSFSASVITS 108


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 74  YPLIVISDAGIRMRDDTLLDMVQHLKENVAIVHQMPFAYDA 196
           +P  ++S+A I+      LDM+    EN +I   +PFA D+
Sbjct: 646 FPKDLLSNAYIQQGFSKGLDMMNECLENKSITAPLPFAKDS 686


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 442 NSGTRSVGALQARLTRWARLRVAWCRPLLCWSHSASV 552
           NSG  SV +  ARLT W   R+     L+ +SH  S+
Sbjct: 268 NSGKLSVLSKNARLTHWVERRIGKSTSLV-YSHVLSM 303


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 227 YFGTSQARMSSEPIFSASIVTSACRP*SGV 316
           +FG+S   MSSE     S +TS   P SGV
Sbjct: 420 FFGSSPQSMSSEQTDMMSPITSPLAPFSGV 449


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 157 VLFQVLHHVEQGIVSHSDPGVAYYDKRVFGGDISLLHVVDLRVHSDIQSADE 2
           VL+ +  H    ++  +DP +A Y    F  +  +LH  D+R  + ++ A +
Sbjct: 85  VLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVLHGYDIRALAQLKIASD 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,711
Number of Sequences: 5004
Number of extensions: 55160
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)