Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0235.Seq
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1183 + 10157813-10159909                                         29   2.7  
04_04_0058 - 22416949-22418196                                         29   2.7  
01_01_0075 - 575806-576984,578024-578278                               29   4.7  
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334     28   6.2  
01_07_0241 + 42231224-42232615                                         28   6.2  
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    28   8.3  
06_01_1012 + 7926408-7927232                                           28   8.3  
04_04_0427 + 25137036-25137119,25137687-25137826,25139775-251398...    28   8.3  

>06_01_1183 + 10157813-10159909
          Length = 698

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = -1

Query: 587 SCSPGGSCAQRHTLAEWLQQSSGRHHATRNRAHRVSRACSAPTDRVPEFCSAGNDATR 414
           S S  GS  Q+HT+ EW  Q+ G   AT N +   +   +A    VP   +AG  A+R
Sbjct: 248 SASTEGS-TQQHTIKEWTFQTFGFPSAT-NSSSFSNTTGNASAQTVPGEAAAGGAASR 303


>04_04_0058 - 22416949-22418196
          Length = 415

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 601 APKSCPAAQAAPAPNGIHSLSGSSRVVAG 515
           AP +CP A  AP+P+ +H  +G  R   G
Sbjct: 44  APWACPPAFPAPSPSPLHGAAGGRRDQGG 72


>01_01_0075 - 575806-576984,578024-578278
          Length = 477

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +1

Query: 415 RVASLP---ALQNSGTRSVGALQ---ARLTRWARLRVAWCRPLLCWSHSASVCRWAQEPP 576
           R+A LP   AL  +G    G LQ   A   R  R   +W  P LC+S++A     A  PP
Sbjct: 372 RLAELPNIGALYLNGNNLTGTLQFSPAFYQRMGRRFASWDNPGLCYSNAAVDA--AHAPP 429

Query: 577 GL 582
           G+
Sbjct: 430 GV 431


>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
          Length = 554

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 222 KYTSERHRRECPRSRFSRHQLSRRHVDLDPALRYRGSRRTCRVRGLSR 365
           K TSE  R  CP  + S+H L    V     L  R   R C+ RG+ R
Sbjct: 101 KMTSEATRSWCPIHKTSKHTLQTCWV----FLNVRAEIRICKERGIQR 144


>01_07_0241 + 42231224-42232615
          Length = 463

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 200 LRHHTRRASGERSRRSLSSVAPCRAGYRLAFG 105
           LRHH     G  +R +L  + P R G   AFG
Sbjct: 41  LRHHVAYTDGSVARAALLRLNPARLGPSFAFG 72


>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 619 KKANGSAPKSCPAAQAAPAP 560
           KKANG AP + P+  A P+P
Sbjct: 170 KKANGHAPNAPPSRSAKPSP 189


>06_01_1012 + 7926408-7927232
          Length = 274

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -2

Query: 691 GGEPFCTDCNINQSERNHTNTCTR-KKAN-GSAPKSCPAAQAAPAPNGIHSLSGSSRVVA 518
           GGE  C D       R+H  T +  K AN  +AP   PA +A     G+  L   +  V 
Sbjct: 185 GGE--CDDAKSEHRRRHHHKTTSAAKNANPAAAPPRSPAKKAPSGGAGVRMLGRHAVAVC 242

Query: 517 G 515
           G
Sbjct: 243 G 243


>04_04_0427 +
           25137036-25137119,25137687-25137826,25139775-25139846,
           25141160-25141470,25141595-25141705,25143548-25143640,
           25144063-25144212,25145062-25145120,25145636-25145693,
           25146351-25146622
          Length = 449

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
 Frame = +3

Query: 198 KDLLLFTRKYTSERHRRECPRSRFSRHQLSRRHVDLDPALRYRGSRRTCRVRGLSR*RLL 377
           +D  +F RK T   H  +    R  + Q  +    +  A   RGS+R  R     R   L
Sbjct: 88  RDRGIFLRK-TQSYHSSQSDSRRKKKKQQQQSSQPVRRARSNRGSKRRRREDSTVRLYRL 146

Query: 378 YGKGNSIARMEDACGVVAGAAEFWDSVC----GRAAGPAYTVGTVARRMVP 518
            G+ +     + +CG   G  E   +      GRAA P     + A R+VP
Sbjct: 147 MGEEDISNDSKSSCGCEDGTVEAPAAAAPKENGRAADPRLQAISDAIRVVP 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,112,181
Number of Sequences: 37544
Number of extensions: 433502
Number of successful extensions: 1652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)