Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0235.Seq
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2) 35 0.056
SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15) 31 0.90
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10) 31 0.90
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38) 30 1.6
SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_4734| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_41879| Best HMM Match : DUF1658 (HMM E-Value=7) 29 4.8
SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13) 29 4.8
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9) 28 6.4
SB_13196| Best HMM Match : VSP (HMM E-Value=1.4) 28 6.4
SB_59041| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 28 8.4
SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 8.4
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8) 28 8.4
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 28 8.4
SB_32145| Best HMM Match : RFX1_trans_act (HMM E-Value=2.1) 28 8.4
SB_25884| Best HMM Match : Prothymosin (HMM E-Value=6.3) 28 8.4
SB_17220| Best HMM Match : Prothymosin (HMM E-Value=4.9) 28 8.4
>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
Length = 404
Score = 35.1 bits (77), Expect = 0.056
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 661 INQSERNHTNTCTRKKANGSAPKSCPAAQAAPAPNGIHSLSGS 533
+ E+ H T T K + PK + Q +PA GI S SGS
Sbjct: 271 LTSKEKKHEKTKTAKPSKAKKPKKSESPQRSPANTGIESASGS 313
>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
Length = 1224
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 658 NQSERNHTNTCTRKKANGSAPKSCPAAQAAPAPNGIHSLSGSSRVVAG 515
N ER+HT+ C+ G+ P+ + P G ++ GS + G
Sbjct: 989 NSPERSHTHDCSNTPEGGNTPRGSHTHDGSNTPEGGNTHDGSHTLEGG 1036
>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
Length = 673
Score = 31.1 bits (67), Expect = 0.90
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +2
Query: 5 VGGLNVGV-NPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHLKENVAIVHQ-M 178
VG L V N ++ Q G + + L ++ + R + L ++ + + +H+ +
Sbjct: 9 VGNLPPPVFNKRLFKAQAGILLTEEILQILRRSPQEERSLSELSKLKAVVNGLKEIHKDL 68
Query: 179 PFAYDAEGFAAVYEKVYFGTSQARMSSEPIFSASIVTS 292
+ DA G+A YEKV G + + SE + S V S
Sbjct: 69 QYIKDALGYAINYEKVESGKTVTKQHSEKVLSCYFVLS 106
>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
Length = 1215
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -3
Query: 474 LQRAHRPSPRILQRRQRRHTHLPSSRYYFLCHKVIFS-EIVREHGKSSCFLDSATPDQGR 298
++ H P P L + R +Y LCH+++ +++R+ GKSS + T QG
Sbjct: 1084 IEVCHLPDPYSLNGLRLRRISGNQWQYKKLCHELLGGMDLLRDTGKSSPGCVAITSSQGL 1143
Query: 297 HADVTIDAEKIGS 259
H I + + G+
Sbjct: 1144 HDGQIIPSLRDGN 1156
>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 237 RHRRECPRSRFSRHQLSRRHVDLDPALRYRGSRRTCRVR-GLSR*RLLYGKGNSIARMED 413
R+R+ CP +R+ + R+ P RYR R R R G R Y KG +AR +
Sbjct: 304 RYRKGCPLARYRKGCPLARYRKGCPLARYRKGRPLARYRKGCPLAR--YRKGCPLARYRE 361
Query: 414 AC 419
C
Sbjct: 362 GC 363
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 237 RHRRECPRSRFSRHQLSRRHVDLDPALRYRGSRRTCRVRGLSR*RLLYGKGNSIARMEDA 416
R+R++CP +R+ + R+ P RYR R R R Y KG +AR
Sbjct: 295 RYRKDCPLARYRKGCPLARYRKGCPLARYRKGCPLARYR-KGRPLARYRKGCPLARYRKG 353
Query: 417 C 419
C
Sbjct: 354 C 354
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 237 RHRRECPRSRFSRHQLSRRHVDLDPALRYRGSRRTCRVR-GLSR*RLLYGKGNSIARMED 413
R+R+ECP +R+ + R+ P RYR R R G R Y KG +AR
Sbjct: 268 RYRKECPLARYRKGCPLARYRKGCPLARYRKDCPLARYRKGCPLAR--YRKGCPLARYRK 325
Query: 414 AC 419
C
Sbjct: 326 GC 327
>SB_4734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -1
Query: 617 KGQWLCSKELSCSPGGSCAQRHTLAEWLQQSSGRHHATRNRAHRVSRACSAPTDRVPEFC 438
KG WL SK + P G HT + + + R H R+ H + AC +
Sbjct: 2 KGIWLTSKFETEIPRGYTLLSHTRSPGKENFAKRIHGFRDATHNIWAACMVYLKCRGRYH 61
Query: 437 SAGN-DATRIF 408
S N +ATR F
Sbjct: 62 SYQNQNATRTF 72
>SB_41879| Best HMM Match : DUF1658 (HMM E-Value=7)
Length = 180
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 622 RKKANGSAPKSCPAAQAAPAPNGIHSL 542
R+K + S PKS P + +P G HS+
Sbjct: 120 RQKGHKSTPKSSPGVETRRSPRGAHSV 146
>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
Length = 233
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = -3
Query: 456 PSPRILQRRQRRHTHLPSSRYYFLCHKVIFSEIVREHGKSSCFLDSATPDQGR-HADVTI 280
P PRI+ R TH P + FLCH + I GK+ PDQ R HA++T
Sbjct: 49 PVPRII--RTTYVTHSPHDFHSFLCH--THAAIT---GKA--HPSGRPPDQPRTHAEITG 99
Query: 279 DAEKIGSEDIRACDVPKYTFS*TAANPSA 193
++ +G+ A P F A PSA
Sbjct: 100 NSSSLGTSTGPASLDPTIAFP-VAIRPSA 127
>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
Length = 678
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 477 GLQRAHRPSPRILQRRQRRHTHLPSSR 397
G R H PR R +R+HT LP S+
Sbjct: 466 GRHRQHNDLPRSQTREERQHTDLPRSQ 492
>SB_13196| Best HMM Match : VSP (HMM E-Value=1.4)
Length = 500
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C+ QSE H TCT +++ K+C Q+
Sbjct: 121 CSHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 152
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 186 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 217
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 199 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 230
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 212 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 243
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 225 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 256
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 238 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 269
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 251 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 282
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 264 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 295
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 277 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 308
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 368 CTHEQSEDGHMRTCTHEQSEDGHMKTCTHEQS 399
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 381 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 412
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 394 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 425
>SB_59041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 229 VYFLVNSSKSFGIIREGHLVNDRDVLF 149
+Y + NS K +RE L+NDRD+ F
Sbjct: 53 IYMVFNSDKP-SYVRENTLLNDRDIYF 78
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 105 SECETIPCSTWCNT*KRTSRSFTRCPSRMMPK 200
S C+ P T+ + K T+ S CPS+M K
Sbjct: 710 SSCDHCPLGTYQDLEKHTNTSCVSCPSKMSTK 741
>SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 854
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 536 LQQSSGRHHATRNRAHRVSRACSAPTDRVPEFCSAGNDATRIFH 405
L ++G A +N HR+S A + PE + G+ T I H
Sbjct: 306 LSCTTGEGGAAKNTIHRISAAVYESLGKAPENTARGHIQTSIVH 349
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -1
Query: 266 SAPRTFAPVTFRSILSRKQQQILR---HHTRRASGERSRRSLSSVAP 135
+A R PVTF I K Q I HH +R G+ L ++AP
Sbjct: 395 TAERLNRPVTFGDIEDVKPQLICNVTAHHWKRTEGDEHSYELLTIAP 441
>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
Length = 989
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 536 LQQSSGRHHATRNRAHRVSRACSAPTDRVPEFCSAGNDATRIFH 405
L ++G A +N HR+S A + PE + G+ T I H
Sbjct: 411 LSCTTGEGGAAKNTIHRISAAVYESLGKAPENTARGHIQTSIVH 454
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 649 ERNHTNTCTRKKANGSAPKSCPAAQAAPA 563
E+ + K A GS PK PA QAAPA
Sbjct: 12 EQERLSGQVNKLAIGSTPKPSPAPQAAPA 40
>SB_32145| Best HMM Match : RFX1_trans_act (HMM E-Value=2.1)
Length = 184
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 619 KKANGSAPKSCPAAQAAPAPNGIHSLSGSSRVVAGT 512
KK+ S P S P+A APAP + + SS V GT
Sbjct: 109 KKSEASKPSSEPSAVEAPAP--LTNAQASSAFVQGT 142
>SB_25884| Best HMM Match : Prothymosin (HMM E-Value=6.3)
Length = 175
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 82 CTHEQSEDGHMRTCTHEQSEDGHMKTCTHEQS 113
>SB_17220| Best HMM Match : Prothymosin (HMM E-Value=4.9)
Length = 256
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 69 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 100
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 82 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 113
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 95 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 126
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 186 CTHEQSEDGHMRTCTHEQSEDGHMKTCTHEQS 217
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 199 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 230
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 667 CNINQSERNHTNTCTRKKANGSAPKSCPAAQA 572
C QSE H TCT +++ K+C Q+
Sbjct: 212 CTHEQSEDGHMKTCTHEQSEDGHMKTCTHEQS 243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,702,914
Number of Sequences: 59808
Number of extensions: 486647
Number of successful extensions: 1873
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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