Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0235.Seq
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-2|AAC48147.3| 443|Caenorhabditis elegans Hypothetical pr... 96 2e-20
AF364401-1|AAK73018.1| 443|Caenorhabditis elegans ceramide gluc... 96 2e-20
U53332-9|AAO38632.1| 392|Caenorhabditis elegans Ceramide glucos... 94 1e-19
U53332-8|AAL32224.1| 459|Caenorhabditis elegans Ceramide glucos... 94 1e-19
U53332-7|AAM15582.1| 379|Caenorhabditis elegans Ceramide glucos... 94 1e-19
U53332-6|AAL32225.1| 470|Caenorhabditis elegans Ceramide glucos... 94 1e-19
DQ178634-1|ABD75713.1| 470|Caenorhabditis elegans ceramide glyc... 94 1e-19
DQ178633-1|ABD75712.1| 470|Caenorhabditis elegans ceramide glyc... 94 1e-19
DQ178632-1|ABD75711.1| 392|Caenorhabditis elegans ceramide glyc... 94 1e-19
Z81116-9|CAB03296.2| 466|Caenorhabditis elegans Hypothetical pr... 88 7e-18
U42844-8|AAB53820.1| 400|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 5.6
>U58735-2|AAC48147.3| 443|Caenorhabditis elegans Hypothetical
protein F20B4.6 protein.
Length = 443
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG +G+NPKINNM Y AKY LI+ISD+GI M+ D +LDM + E +A+V Q
Sbjct: 160 FFGGEKIGLNPKINNMMPAYRIAKYQLIMISDSGIFMKSDAVLDMASTMMSHETMALVTQ 219
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D +GFA+V+E++YFGTS AR+
Sbjct: 220 TPYCKDRKGFASVFEQIYFGTSHARI 245
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/85 (43%), Positives = 58/85 (68%)
Frame = +1
Query: 256 LGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVASLPA 435
L + L NC GMS+++++ A++E GG A F+ YLAEDYF K++ SRG+K +++ PA
Sbjct: 247 LAGNCLQFNCPTGMSSMMKKEALDECGGFAAFSGYLAEDYFFGKKLASRGYKSGISTHPA 306
Query: 436 LQNSGTRSVGALQARLTRWARLRVA 510
LQNS ++ + R+ RW +LR+A
Sbjct: 307 LQNSAAVTMTSFTDRVCRWVKLRMA 331
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P +EPL +C P + L ++HV+ W D +++ +QN
Sbjct: 332 MMPQIIFVEPLQDCFPSALIISFSLNYIANIDMLTTIMLHVVFWITMDCMVMCKMQNKKM 391
Query: 690 PFT 698
F+
Sbjct: 392 SFS 394
>AF364401-1|AAK73018.1| 443|Caenorhabditis elegans ceramide
glucosyltransferase protein.
Length = 443
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG +G+NPKINNM Y AKY LI+ISD+GI M+ D +LDM + E +A+V Q
Sbjct: 160 FFGGEKIGLNPKINNMMPAYRIAKYQLIMISDSGIFMKSDAVLDMASTMMSHETMALVTQ 219
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D +GFA+V+E++YFGTS AR+
Sbjct: 220 TPYCKDRKGFASVFEQIYFGTSHARI 245
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/85 (43%), Positives = 58/85 (68%)
Frame = +1
Query: 256 LGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVASLPA 435
L + L NC GMS+++++ A++E GG A F+ YLAEDYF K++ SRG+K +++ PA
Sbjct: 247 LAGNCLQFNCPTGMSSMMKKEALDECGGFAAFSGYLAEDYFFGKKLASRGYKSGISTHPA 306
Query: 436 LQNSGTRSVGALQARLTRWARLRVA 510
LQNS ++ + R+ RW +LR+A
Sbjct: 307 LQNSAAVTMTSFTDRVCRWVKLRMA 331
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P +EPL +C P + L ++HV+ W D +++ +QN
Sbjct: 332 MMPQIIFVEPLQDCFPSALIISFSLNYIANIDMLTTIMLHVVFWITMDCMVMCKMQNKKM 391
Query: 690 PFT 698
F+
Sbjct: 392 SFS 394
>U53332-9|AAO38632.1| 392|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform d protein.
Length = 392
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG VG+NPKINNM Y +A YPLI++SD+GI MR D +LDM + E +A+V Q
Sbjct: 110 FFGGETVGLNPKINNMMPAYRSALYPLILVSDSGIFMRSDGVLDMATTMMSHEKMALVTQ 169
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D EGF A +E++YFGTS R+
Sbjct: 170 TPYCKDREGFDAAFEQMYFGTSHGRI 195
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +1
Query: 244 GANVLGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVA 423
G L + + C GMS+++++ A++E GG++ F YLAEDYF +E+ +RG+K ++
Sbjct: 193 GRIYLAGNCMDFVCSTGMSSMMKKEALDECGGISNFGGYLAEDYFFGRELANRGYKSAIS 252
Query: 424 SLPALQNSGTRSVGALQARLTRWARLRVA 510
S PALQNS + SV + R+ RW +LR+A
Sbjct: 253 SHPALQNSSSVSVSSFLDRICRWVKLRIA 281
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P L+EPL +C P + ++H + WF D+ ++ S+QNG
Sbjct: 282 MLPHILLVEPLQDCFPSGLIMAFSLNHLVGLNIMPILILHTIYWFSMDYSLMNSMQNGKL 341
Query: 690 PFT 698
F+
Sbjct: 342 SFS 344
>U53332-8|AAL32224.1| 459|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform a protein.
Length = 459
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG VG+NPKINNM Y +A YPLI++SD+GI MR D +LDM + E +A+V Q
Sbjct: 177 FFGGETVGLNPKINNMMPAYRSALYPLILVSDSGIFMRSDGVLDMATTMMSHEKMALVTQ 236
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D EGF A +E++YFGTS R+
Sbjct: 237 TPYCKDREGFDAAFEQMYFGTSHGRI 262
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +1
Query: 244 GANVLGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVA 423
G L + + C GMS+++++ A++E GG++ F YLAEDYF +E+ +RG+K ++
Sbjct: 260 GRIYLAGNCMDFVCSTGMSSMMKKEALDECGGISNFGGYLAEDYFFGRELANRGYKSAIS 319
Query: 424 SLPALQNSGTRSVGALQARLTRWARLRVA 510
S PALQNS + SV + R+ RW +LR+A
Sbjct: 320 SHPALQNSSSVSVSSFLDRICRWVKLRIA 348
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P L+EPL +C P + ++H + WF D+ ++ S+QNG
Sbjct: 349 MLPHILLVEPLQDCFPSGLIMAFSLNHLVGLNIMPILILHTIYWFSMDYSLMNSMQNGKL 408
Query: 690 PFT 698
F+
Sbjct: 409 SFS 411
>U53332-7|AAM15582.1| 379|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform c protein.
Length = 379
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG VG+NPKINNM Y +A YPLI++SD+GI MR D +LDM + E +A+V Q
Sbjct: 188 FFGGETVGLNPKINNMMPAYRSALYPLILVSDSGIFMRSDGVLDMATTMMSHEKMALVTQ 247
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D EGF A +E++YFGTS R+
Sbjct: 248 TPYCKDREGFDAAFEQMYFGTSHGRI 273
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +1
Query: 244 GANVLGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVA 423
G L + + C GMS+++++ A++E GG++ F YLAEDYF +E+ +RG+K ++
Sbjct: 271 GRIYLAGNCMDFVCSTGMSSMMKKEALDECGGISNFGGYLAEDYFFGRELANRGYKSAIS 330
Query: 424 SLPALQNSGTRSVGALQARLTRWARLRVA 510
S PALQNS + SV + R+ RW +LR+A
Sbjct: 331 SHPALQNSSSVSVSSFLDRICRWVKLRIA 359
>U53332-6|AAL32225.1| 470|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform b protein.
Length = 470
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG VG+NPKINNM Y +A YPLI++SD+GI MR D +LDM + E +A+V Q
Sbjct: 188 FFGGETVGLNPKINNMMPAYRSALYPLILVSDSGIFMRSDGVLDMATTMMSHEKMALVTQ 247
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D EGF A +E++YFGTS R+
Sbjct: 248 TPYCKDREGFDAAFEQMYFGTSHGRI 273
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +1
Query: 244 GANVLGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVA 423
G L + + C GMS+++++ A++E GG++ F YLAEDYF +E+ +RG+K ++
Sbjct: 271 GRIYLAGNCMDFVCSTGMSSMMKKEALDECGGISNFGGYLAEDYFFGRELANRGYKSAIS 330
Query: 424 SLPALQNSGTRSVGALQARLTRWARLRVA 510
S PALQNS + SV + R+ RW +LR+A
Sbjct: 331 SHPALQNSSSVSVSSFLDRICRWVKLRIA 359
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P L+EPL +C P + ++H + WF D+ ++ S+QNG
Sbjct: 360 MLPHILLVEPLQDCFPSGLIMAFSLNHLVGLNIMPILILHTIYWFSMDYSLMNSMQNGKL 419
Query: 690 PFT 698
F+
Sbjct: 420 SFS 422
>DQ178634-1|ABD75713.1| 470|Caenorhabditis elegans ceramide
glycosyl transferase protein.
Length = 470
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG VG+NPKINNM Y +A YPLI++SD+GI MR D +LDM + E +A+V Q
Sbjct: 188 FFGGETVGLNPKINNMMPAYRSALYPLILVSDSGIFMRSDGVLDMATTMMSHEKMALVTQ 247
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D EGF A +E++YFGTS R+
Sbjct: 248 TPYCKDREGFDAAFEQMYFGTSHGRI 273
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +1
Query: 244 GANVLGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVA 423
G L + + C GMS+++++ A++E GG++ F YLAEDYF +E+ +RG+K ++
Sbjct: 271 GRIYLAGNCMDFVCSTGMSSMMKKEALDECGGISNFGGYLAEDYFFGRELANRGYKSAIS 330
Query: 424 SLPALQNSGTRSVGALQARLTRWARLRVA 510
S PALQNS + SV + R+ RW +LR+A
Sbjct: 331 SHPALQNSSSVSVSSFLDRICRWVKLRIA 359
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P L+EPL +C P + ++H + WF D+ ++ S+QNG
Sbjct: 360 MLPHILLVEPLQDCFPSGLIMAFSLNHLVGLNIMPILILHTIYWFSMDYSLMNSMQNGKL 419
Query: 690 PFT 698
F+
Sbjct: 420 SFS 422
>DQ178633-1|ABD75712.1| 470|Caenorhabditis elegans ceramide
glycosyl transferase protein.
Length = 470
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG VG+NPKINNM Y +A YPLI++SD+GI MR D +LDM + E +A+V Q
Sbjct: 188 FFGGETVGLNPKINNMMPAYRSALYPLILVSDSGIFMRSDGVLDMATTMMSHEKMALVTQ 247
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D EGF A +E++YFGTS R+
Sbjct: 248 TPYCKDREGFDAAFEQMYFGTSHGRI 273
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +1
Query: 244 GANVLGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVA 423
G L + + C GMS+++++ A++E GG++ F YLAEDYF +E+ +RG+K ++
Sbjct: 271 GRIYLAGNCMDFVCSTGMSSMMKKEALDECGGISNFGGYLAEDYFFGRELANRGYKSAIS 330
Query: 424 SLPALQNSGTRSVGALQARLTRWARLRVA 510
S PALQNS + SV + R+ RW +LR+A
Sbjct: 331 SHPALQNSSSVSVSSFLDRICRWVKLRIA 359
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P L+EPL +C P + ++H + WF D+ ++ S+QNG
Sbjct: 360 MLPHILLVEPLQDCFPSGLIMAFSLNHLVGLNIMPILILHTIYWFSMDYSLMNSMQNGKL 419
Query: 690 PFT 698
F+
Sbjct: 420 SFS 422
>DQ178632-1|ABD75711.1| 392|Caenorhabditis elegans ceramide
glycosyl transferase protein.
Length = 392
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FVGGLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQ 175
F GG VG+NPKINNM Y +A YPLI++SD+GI MR D +LDM + E +A+V Q
Sbjct: 110 FFGGETVGLNPKINNMMPAYRSALYPLILVSDSGIFMRSDGVLDMATTMMSHEKMALVTQ 169
Query: 176 MPFAYDAEGFAAVYEKVYFGTSQARM 253
P+ D EGF A +E++YFGTS R+
Sbjct: 170 TPYCKDREGFDAAFEQMYFGTSHGRI 195
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +1
Query: 244 GANVLGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVA 423
G L + + C GMS+++++ A++E GG++ F YLAEDYF +E+ +RG+K ++
Sbjct: 193 GRIYLAGNCMDFVCSTGMSSMMKKEALDECGGISNFGGYLAEDYFFGRELANRGYKSAIS 252
Query: 424 SLPALQNSGTRSVGALQARLTRWARLRVA 510
S PALQNS + SV + R+ RW +LR+A
Sbjct: 253 SHPALQNSSSVSVSSFLDRICRWVKLRIA 281
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P L+EPL +C P + ++H + WF D+ ++ S+QNG
Sbjct: 282 MLPHILLVEPLQDCFPSGLIMAFSLNHLVGLNIMPILILHTIYWFSMDYSLMNSMQNGKL 341
Query: 690 PFT 698
F+
Sbjct: 342 SFS 344
>Z81116-9|CAB03296.2| 466|Caenorhabditis elegans Hypothetical
protein T06C12.10 protein.
Length = 466
Score = 87.8 bits (208), Expect = 7e-18
Identities = 41/83 (49%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +2
Query: 11 GLNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHL--KENVAIVHQMPF 184
G VG+NPK+NNM Y AA+YPL++ISD+ I MR D +LDM + E +A V Q+P+
Sbjct: 172 GEPVGMNPKVNNMMPAYRAARYPLVLISDSAIFMRPDGILDMATTMMSHEKMASVTQIPY 231
Query: 185 AYDAEGFAAVYEKVYFGTSQARM 253
D +GF A +E+++FGTS AR+
Sbjct: 232 CKDRQGFHAAFEQIFFGTSHARL 254
Score = 87.8 bits (208), Expect = 7e-18
Identities = 39/85 (45%), Positives = 60/85 (70%)
Frame = +1
Query: 256 LGADFLGINCHVGMSTLIRRCAIEEAGGLAVFADYLAEDYFMAKEIVSRGWKMRVASLPA 435
L +FLG+ C GMS+++++ A++E GG+ F +YLAEDYF AK + SRG K +++ PA
Sbjct: 256 LVGNFLGVVCSSGMSSMMKKSALDECGGMEKFGEYLAEDYFFAKALTSRGCKAAISTHPA 315
Query: 436 LQNSGTRSVGALQARLTRWARLRVA 510
LQNS + +V + R+ RW +LR+A
Sbjct: 316 LQNSASVTVLSFFNRIGRWIKLRIA 340
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +3
Query: 510 MVPATTLLEPLSECMPLXXXXXXXXXXXXXXEPLAFFLVHVLVWFLSDWLMLQSVQNGSP 689
M+P ++EPL +C+ F +H+ W + D+ ++ S+QNG
Sbjct: 341 MMPHLMVVEPLQDCVTSGLIMAFGLNYLGGYSVYKTFGLHLFYWIVMDFSLMTSMQNGKF 400
Query: 690 PFT 698
FT
Sbjct: 401 NFT 403
>U42844-8|AAB53820.1| 400|Caenorhabditis elegans Hypothetical
protein C08A9.8 protein.
Length = 400
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 551 TLAEWLQQSSGRHHATRNRAHRVSRACSAPTDRVP 447
T+A++L + + H T RA ++ ++ S T+R P
Sbjct: 34 TMADYLLLENTKFHKTATRAPKIKKSASITTERSP 68
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 607 GSAPKSCPAAQAAPAP 560
G AP++ PA QAAPAP
Sbjct: 384 GGAPQAAPAPQAAPAP 399
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,094,822
Number of Sequences: 27780
Number of extensions: 330168
Number of successful extensions: 1191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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