Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0235.Seq
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein...    33   0.18 
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami...    33   0.24 
At2g22720.3 68415.m02692 expressed protein                             31   0.98 
At2g22720.2 68415.m02691 expressed protein                             31   0.98 
At2g22720.1 68415.m02693 expressed protein                             31   0.98 
At1g38380.1 68414.m04694 hypothetical protein                          29   3.9  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         28   5.2  
At2g23540.1 68415.m02809 GDSL-motif lipase/hydrolase family prot...    28   6.9  

>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
            contains Pfam profile: PF01068 ATP dependent DNA ligase
            domain
          Length = 1417

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 527  SSGRHHATRNRAHRVSRACSAPTDRVPEFCSAGNDATRIFH 405
            S G  H +R  + R  R  S  TDR PE CS   D   +FH
Sbjct: 1365 SLGLVHPSRGISVRFPRFISKVTDRNPEECSTATDIAEMFH 1405


>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains similarity to Swiss-Prot:P29375
           retinoblastoma-binding protein 2 (RBBP-2) [Homo
           sapiens]; contains Pfam domains PF02375: jmjN domain and
           PF02373: jmjC domain; intron between exons 6 and 7 was
           required to circumvent a frameshift.  There could be an
           underlying sequence error.
          Length = 787

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +3

Query: 93  ATPGSECETIPCSTW---CNT*KRTSRSFTRCPSRMMPKDLLLFTRKYTSERHRRECPRS 263
           A P   C  IP STW   C   +++    T+ P+R+   DLL        +   R+  R 
Sbjct: 83  AEPYGICRIIPPSTWKPPCRLKEKSIWEQTKFPTRIQTVDLLQNREPMKKKPKSRKRKRR 142

Query: 264 RFSRHQLSRRHVDLDPA 314
           R SR   S+R     PA
Sbjct: 143 RNSRMGSSKRRSGSSPA 159


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 317 QRRIKVDMPT*QLMPRKSAPRTFAPVTFRSILSRKQQQILRHHTRRASGERSRRS 153
           QR++  DM T +++P++SAP +   +  +  L R   + + H  R    ++  RS
Sbjct: 441 QRKVSRDMATPRMIPKQSAPTSKHQMMSKPALKRPPSRDIDHERRLLKKKKPARS 495


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 317 QRRIKVDMPT*QLMPRKSAPRTFAPVTFRSILSRKQQQILRHHTRRASGERSRRS 153
           QR++  DM T +++P++SAP +   +  +  L R   + + H  R    ++  RS
Sbjct: 544 QRKVSRDMATPRMIPKQSAPTSKHQMMSKPALKRPPSRDIDHERRLLKKKKPARS 598


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 317 QRRIKVDMPT*QLMPRKSAPRTFAPVTFRSILSRKQQQILRHHTRRASGERSRRS 153
           QR++  DM T +++P++SAP +   +  +  L R   + + H  R    ++  RS
Sbjct: 212 QRKVSRDMATPRMIPKQSAPTSKHQMMSKPALKRPPSRDIDHERRLLKKKKPARS 266


>At1g38380.1 68414.m04694 hypothetical protein
          Length = 378

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -1

Query: 596 KELSCSPGGSCAQRHTLAEWLQQSSGRHHATRNRAHRVSRACSAPTDRVPEF 441
           +EL C+        H    +    S  H A R R HR   + SAPT    EF
Sbjct: 274 EELPCTALTKITSEHEELSFCPDPSLMHAAPRTRRHRGLASRSAPTQTEDEF 325


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 598 PKSCPAAQAAPAPNGIHSLSGS 533
           P S P A+  P P G HSLSG+
Sbjct: 226 PPSAPYARTPPQPLGSHSLSGN 247


>At2g23540.1 68415.m02809 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 387

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/55 (25%), Positives = 31/55 (56%)
 Frame = +2

Query: 14  LNVGVNPKINNMQQGYIAAKYPLIVISDAGIRMRDDTLLDMVQHLKENVAIVHQM 178
           + +G N  +NN    Y+   +PL+ +     +  DD + DM++HL++ +  ++Q+
Sbjct: 186 ITIGANDFLNN----YL---FPLLSVGTRFTQTPDDFIGDMLEHLRDQLTRLYQL 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,583
Number of Sequences: 28952
Number of extensions: 309696
Number of successful extensions: 993
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)