Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0234.Seq
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           26   0.35 
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.8  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   9.8  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 142 HRPKWSNFNSSVVTQSCSKANAARKPFASCSQMIIALI-ENSDEPCREK 285
           H P+ S   S  +TQ       +++P A   +    L+  NSD  C+ K
Sbjct: 24  HSPQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK 72


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 87  WVCPCDGGSRSINHQDFYYLPFYS 16
           W+C     + S   ++FYYLP  S
Sbjct: 49  WICALVNYNVSEISENFYYLPAMS 72


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 217 PFASCSQMIIALIENSDEPCREKQPS 294
           PF+ C+       E  ++P   KQPS
Sbjct: 62  PFSPCNNTANYKSEAQNQPSSYKQPS 87


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 260 FSIRAIII*EHDANGFLAAFAFEQDCVTTEELKLLHF 150
           FS  + ++   D N      + E++CV+   LK L F
Sbjct: 47  FSFTSSMVQSLDGNSSDLENSSEENCVSMSNLKKLKF 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,642
Number of Sequences: 336
Number of extensions: 3603
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)