Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0234.Seq
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 107 2e-24
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 32 0.092
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 0.86
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 28 1.1
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.1
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 28 1.5
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 27 2.0
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 2.0
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 2.0
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 27 2.6
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 27 2.6
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 27 2.6
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 26 6.1
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 6.1
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 6.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 6.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 8.0
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 8.0
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 107 bits (256), Expect = 2e-24
Identities = 44/67 (65%), Positives = 57/67 (85%)
Frame = +2
Query: 308 DVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGG 487
D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F+VRG
Sbjct: 118 DIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGS 177
Query: 488 MRAVEFK 508
MR VEFK
Sbjct: 178 MRQVEFK 184
Score = 98.3 bits (234), Expect = 9e-22
Identities = 46/79 (58%), Positives = 60/79 (75%)
Frame = +3
Query: 18 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 197
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 198 GKRRKETVCIVLSDDNCPD 254
GKRRK+TV IVL+D+ D
Sbjct: 81 GKRRKDTVLIVLTDEEMED 99
Score = 82.6 bits (195), Expect = 5e-17
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = +1
Query: 505 QMVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEV 681
++V+ P F IV+ DT+IH +GEPI RE+EE +L VGYDDIGGCR+Q+AQI+E+VE+
Sbjct: 184 KVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVEL 242
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 31.9 bits (69), Expect = 0.092
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 616 VGYDDIGGCRKQLAQIKEMVEVATAS 693
V Y D+GGC++Q+ +++E+VE+ S
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLS 201
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.86
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 39 SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 212
S +D+S + RR R + + A S D++ V A S +L G+T+ K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302
Query: 213 ETVCIVLSD 239
VC+ L+D
Sbjct: 303 AAVCVALND 311
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 610 NAVGYDDIGGCRKQLAQIKEMVEV 681
+AV + IGG + Q+AQI+++VE+
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVEL 297
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 43 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 156
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +1
Query: 484 GHARRRVQMVETDP-----SPFCIVAPDTVIHCDGEPIKREEEEEALNAV 618
GH+ RR E+D + F + TV+ C GE + E E +N V
Sbjct: 94 GHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVV 143
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 568 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEV 681
D +P+ + + Y DIGG Q+ +IKE VE+
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVEL 209
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 541 VAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEVATASSFTV 705
V PD + D E I+REEE++A A ++ Q A + EV +++ TV
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEEEAQLAAQTAAAE--FEVTDSAAGTV 252
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 238 MIIALIENSDEPCREKQPSCASF*CGIHSSVSFSEI 345
+II + + D P REK C S C +++ ++F +
Sbjct: 525 LIIPAVRSHDLPIREKGLECLSLVCLLNADLAFENV 560
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 386 QLNHQLAVCGLV---FHISLKDTELWI 315
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 622 YDDIGGCRKQLAQIKEMVEV 681
Y+ +GG KQ+ +IKE++E+
Sbjct: 144 YEMVGGLEKQIKEIKEVIEL 163
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 386 QLNHQLAVCGLV---FHISLKDTELWI 315
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 64 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANA 207
SSV S S ++M++ + +F+ S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 525 WICFDHLNSTARMPPRTMKVSSRWIGR*ASMKYGFK 418
WI + L + +PP+ +K+S+ +IG S++ F+
Sbjct: 344 WIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFR 379
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 443 YRPIHRDDTFMVRGGMRAVEFKWSKQIHHHFASWLLIP 556
Y+P +DD ++ G + VE S ++ + L IP
Sbjct: 752 YQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIP 789
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 42 PD-DLSTAILRRKDRPNRLIVEEAVSD 119
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 15 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 173
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 130 SWHFHRPKWSNFNSSVVTQSCSKANAARKPFASCSQMIIALIENSDEP 273
S HF +W V S++ + R SC Q I+ +E D+P
Sbjct: 1252 SEHFQDTRWKIIYDHVCKLCLSRSRSLRAASLSCLQRIV--VEQLDQP 1297
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 102 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 215
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 96 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 224
+ +E SD++ ++A++ EQ+ R D LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,187
Number of Sequences: 5004
Number of extensions: 58538
Number of successful extensions: 191
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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