Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0234.Seq
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 122 4e-28
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 119 3e-27
08_02_0657 - 19749835-19751942,19753123-19753561 97 9e-21
09_06_0271 + 21959213-21960559 32 0.39
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 32 0.51
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 32 0.51
11_01_0611 - 4894342-4895448 29 3.6
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 29 4.8
07_01_0287 - 2094333-2094542,2094719-2095999 29 4.8
11_05_0087 + 18970741-18972702 28 6.3
06_01_0057 - 483710-484309 28 8.4
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 122 bits (293), Expect = 4e-28
Identities = 54/84 (64%), Positives = 64/84 (76%)
Frame = +2
Query: 257 KIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFM 436
KIRM DVVS+ CP VKYGKRVHILPIDD+VEG+TGNLF+ +LKPYF+
Sbjct: 88 KIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFL 147
Query: 437 EAYRPIHRDDTFMVRGGMRAVEFK 508
EAYRP+ + D F+VRGGMR+VEFK
Sbjct: 148 EAYRPLRKGDLFLVRGGMRSVEFK 171
Score = 108 bits (259), Expect = 5e-24
Identities = 49/78 (62%), Positives = 61/78 (78%)
Frame = +3
Query: 27 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 206
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 207 RKETVCIVLSDDNCPDRK 260
RK+T+CIVL+DD C + K
Sbjct: 71 RKDTICIVLADDTCEEPK 88
Score = 94.3 bits (224), Expect = 8e-20
Identities = 42/67 (62%), Positives = 54/67 (80%)
Frame = +1
Query: 481 GGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQ 660
GG +++ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG RKQ+AQ
Sbjct: 163 GGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQMAQ 221
Query: 661 IKEMVEV 681
I+E+VE+
Sbjct: 222 IRELVEL 228
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 119 bits (286), Expect = 3e-27
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +2
Query: 257 KIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFM 436
KIRM DVVS+ C VKYGKRVHILPIDD+VEG+TGNLF+ +LKPYF+
Sbjct: 88 KIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFL 147
Query: 437 EAYRPIHRDDTFMVRGGMRAVEFK 508
EAYRP+ + D F+VRGGMR+VEFK
Sbjct: 148 EAYRPVRKGDLFLVRGGMRSVEFK 171
Score = 110 bits (264), Expect = 1e-24
Identities = 52/78 (66%), Positives = 62/78 (79%)
Frame = +3
Query: 27 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 206
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 207 RKETVCIVLSDDNCPDRK 260
RK+T+CIVL+D+ C + K
Sbjct: 71 RKDTICIVLADETCEEPK 88
Score = 94.3 bits (224), Expect = 8e-20
Identities = 42/67 (62%), Positives = 54/67 (80%)
Frame = +1
Query: 481 GGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQ 660
GG +++ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG RKQ+AQ
Sbjct: 163 GGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQMAQ 221
Query: 661 IKEMVEV 681
I+E+VE+
Sbjct: 222 IRELVEL 228
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 97.5 bits (232), Expect = 9e-21
Identities = 40/67 (59%), Positives = 54/67 (80%)
Frame = +2
Query: 308 DVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGG 487
D+V++ PCP+++ KRV + P DDSVEG++G+LFE YLKPYFM+A RP+ + D F+VRG
Sbjct: 108 DLVTVKPCPTIRNAKRVQLRPFDDSVEGISGDLFEPYLKPYFMDALRPVKKGDRFLVRGH 167
Query: 488 MRAVEFK 508
M AVEFK
Sbjct: 168 MHAVEFK 174
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 5/74 (6%)
Frame = +3
Query: 48 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 212
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 213 ETVCIVLSDDNCPD 254
E VC D++CPD
Sbjct: 76 EAVCYAQKDESCPD 89
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/61 (55%), Positives = 48/61 (78%), Gaps = 2/61 (3%)
Frame = +1
Query: 505 QMVETDPSPF-CIVAPDTVIHCD-GEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 678
++++T+P+ IVA DT I CD G+P+KRE+EE L+ GYDD+GG RKQLAQI+E+VE
Sbjct: 174 KVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEER-LDGPGYDDVGGVRKQLAQIRELVE 232
Query: 679 V 681
+
Sbjct: 233 L 233
>09_06_0271 + 21959213-21960559
Length = 448
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 616 VGYDDIGGCRKQLAQIKEMVEV 681
V YDDIGGC Q +++E VE+
Sbjct: 187 VAYDDIGGCEAQKREVREAVEL 208
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 31.9 bits (69), Expect = 0.51
Identities = 10/22 (45%), Positives = 20/22 (90%)
Frame = +1
Query: 616 VGYDDIGGCRKQLAQIKEMVEV 681
V Y+D+GGC++Q+ +++E+VE+
Sbjct: 165 VTYNDVGGCKEQIEKMREVVEL 186
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 31.9 bits (69), Expect = 0.51
Identities = 10/22 (45%), Positives = 20/22 (90%)
Frame = +1
Query: 616 VGYDDIGGCRKQLAQIKEMVEV 681
V Y+D+GGC++Q+ +++E+VE+
Sbjct: 165 VTYNDVGGCKEQIEKMREVVEL 186
>11_01_0611 - 4894342-4895448
Length = 368
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 478 PGGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEE 597
PGG ARRR Q+++ D + FC D + + ++ E++
Sbjct: 6 PGG-ARRRCQLLDGDTAAFCASLVDGLAQLESTLLREEDD 44
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = -2
Query: 517 FRPFELDGAHAPPDHEGVVTMDRTVSLHEVRLQVYFE*IASKTLN*IINWQYVDSFSI-- 344
F P E DG DHE V+ D+ VSL +V++ Y+E + + T + + ++ D +
Sbjct: 403 FIPLE-DGLRLT-DHEEVIENDKLVSLVDVKVGCYYELVVT-TFSGLYRYRVGDVLQVTG 459
Query: 343 FH*RTRSYGYHIRKTHTKVVSHDTVHPNFLSGQLSS 236
F+ R + + R+ + D + L +++
Sbjct: 460 FYNRAPQFKFICRRNVILSIDSDKTNEEDLHNSVTT 495
>07_01_0287 - 2094333-2094542,2094719-2095999
Length = 496
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 475 GPGGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEEEE 603
G G A RR+ P +A D+ H D + + EEEEE
Sbjct: 109 GAGTSATRRLPATGFGALPTSSMAEDSADHADDDHLAEEEEEE 151
>11_05_0087 + 18970741-18972702
Length = 653
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 481 GGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEE 597
GGH RR VET+ P + A D +H D E R +
Sbjct: 173 GGHVRRLTMHVETERLPVQLTA-DAFLHRDAEDWGRRHD 210
>06_01_0057 - 483710-484309
Length = 199
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 52 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSK 198
Y P ART P ++ + A S W F WS+ S V+T+ S+
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,258,607
Number of Sequences: 37544
Number of extensions: 422675
Number of successful extensions: 1209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -