Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0234.Seq
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        118   4e-27
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          31   0.69 
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     29   2.8  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         29   3.7  
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)                   29   3.7  
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)                   28   6.5  
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                28   6.5  
SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)                 28   6.5  
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)                   28   6.5  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    28   6.5  
SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 28   6.5  
SB_12337| Best HMM Match : RVT_1 (HMM E-Value=0.00049)                 28   6.5  
SB_9404| Best HMM Match : RVT_1 (HMM E-Value=0.00051)                  28   6.5  
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)                   28   6.5  
SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17)                   28   6.5  
SB_23778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)                   28   6.5  
SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)                    28   8.5  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  118 bits (285), Expect = 4e-27
 Identities = 55/72 (76%), Positives = 65/72 (90%)
 Frame = +3

Query: 45  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 224
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVC
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVC 64

Query: 225 IVLSDDNCPDRK 260
           IVLSDD   D K
Sbjct: 65  IVLSDDTISDDK 76



 Score =  114 bits (274), Expect = 8e-26
 Identities = 49/63 (77%), Positives = 56/63 (88%)
 Frame = +1

Query: 481 GGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQ 660
           GG      +++ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIGGCRKQLAQ
Sbjct: 110 GGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIGGCRKQLAQ 169

Query: 661 IKE 669
           IKE
Sbjct: 170 IKE 172



 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 464 DTFMVRGGMRAVEFK 508
           D F+VRGGMRAVEFK
Sbjct: 104 DMFLVRGGMRAVEFK 118


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 556 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEV 681
           VIH  G  IK++ E  A   V +  IGG + Q+  ++EM+E+
Sbjct: 235 VIHPFGSVIKKDSE--AKKGVSFQSIGGLKTQIQAVREMIEM 274


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +1

Query: 616 VGYDDIGGCRKQLAQIKEMVE 678
           V Y DIGGC++Q+ +++E+VE
Sbjct: 81  VTYSDIGGCKEQIDKLREVVE 101


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 99  VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 245
           +EE + D   +V+ S      LQL R  T +LK    K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 379  IINWQYVDSFS-IFH*RTRSYGYHIRKTHT 293
            II W Y +S+  IFH  TR +G H+  T T
Sbjct: 2525 IIAWVYPESWGPIFHYNTRGWGVHLWLTRT 2554


>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
          Length = 1134

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMW 358
           C  +L++    P P  +     W G    + Y F  T   LP R S +  I  +W
Sbjct: 379 CTKYLDAIRHFPIPSNITDMRSWFGLINQVSYAFAATERMLPFRKSLKPGIQFLW 433


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 556 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEV 681
           V+  D +P+    + E      Y DIGG   Q+ +IKE VE+
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVEL 398


>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1017

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 222 CQKYLDTIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 278


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 574 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEV 681
           +P+      E    + Y D+GG  +Q+ +++E++E+
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIEL 153


>SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)
          Length = 172

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 583 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 678
           KREEE E L     + +  C+K+L  ++E++E
Sbjct: 63  KREEELELLLETRTEKLSECKKRLLDLEEIIE 94


>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1229

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 469 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 525


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 583 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 678
           KREEE E L     + +  C+K+L  ++E++E
Sbjct: 664 KREEELELLLETRTEKLSECKKRLLDLEEIIE 695


>SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 955

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 506 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 562


>SB_12337| Best HMM Match : RVT_1 (HMM E-Value=0.00049)
          Length = 447

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 274 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 330


>SB_9404| Best HMM Match : RVT_1 (HMM E-Value=0.00051)
          Length = 471

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 347 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 403


>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 568 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEM 672
           D +  + EEEEE    +G+D+ G   ++L +I+E+
Sbjct: 255 DDDETEDEEEEEEQPVMGWDEYGTSPQRLQRIREL 289


>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
          Length = 420

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 62  CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 118


>SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1273

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 809 CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 865


>SB_23778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 60  CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 116


>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
          Length = 838

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 519 CFDHLNSTARMP-PRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTR 352
           C  +L++  + P P  +     W G    + Y F  T   LP R S +      WT+
Sbjct: 94  CQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTK 150


>SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)
          Length = 85

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 379 IINWQYVDSFSIFH*RTRSYGYHIRKTH--TKVVSHD 275
           +++ Q++D+  +FH   RS    +R TH   +VV HD
Sbjct: 35  VVSNQFIDTALLFHFNHRSASDSVRLTHEQVQVVKHD 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,776,081
Number of Sequences: 59808
Number of extensions: 471667
Number of successful extensions: 1460
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)