Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0234.Seq
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.30 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 525 WICFDHLNSTARMPPRTMKVSSRWIGR*ASMKYGFKYTSNRLPV 394
           W+ FD L+ TA +    M    R+      +KYG K T  R+ V
Sbjct: 117 WVSFDVLSCTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIV 160


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -1

Query: 185 CVTTEELKLLHFGL*KCHD*VVIADCFFDNETVGSVLATEDR 60
           CV+ E L +    L  CH  VV   C  +       L TEDR
Sbjct: 301 CVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTEDR 342


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -3

Query: 606 CFLFFLTFNRFTVTVYYGIRSHDAKW*WICFDHLNST 496
           C L  L  N   + V     + D    WI F+ L+ T
Sbjct: 94  CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDT 130


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -3

Query: 606 CFLFFLTFNRFTVTVYYGIRSHDAKW*WICFDHLNST 496
           C L  L  N   + V     + D    WI F+ L+ T
Sbjct: 94  CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDT 130


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -3

Query: 606 CFLFFLTFNRFTVTVYYGIRSHDAKW*WICFDHLNST 496
           C L  L  N   + V     + D    WI F+ L+ T
Sbjct: 94  CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDT 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,417
Number of Sequences: 438
Number of extensions: 3763
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)