Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0234.Seq
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 122 2e-28
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 122 2e-28
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 117 9e-27
At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identic... 32 0.32
At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identic... 32 0.32
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 32 0.32
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 32 0.43
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.99
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 29 3.0
At1g30750.1 68414.m03758 expressed protein 29 3.0
At5g10520.1 68418.m01218 protein kinase family protein contains ... 28 5.3
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic... 28 5.3
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 28 7.0
At3g17450.1 68416.m02228 hAT dimerisation domain-containing prot... 28 7.0
At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synth... 27 9.2
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 122 bits (295), Expect = 2e-28
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +2
Query: 257 KIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFM 436
KIRM DV+S+ CP VKYGKRVHILP+DD+VEG+TGNLF+ YLKPYF+
Sbjct: 85 KIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFL 144
Query: 437 EAYRPIHRDDTFMVRGGMRAVEFK 508
EAYRP+ + D F+VRGGMR+VEFK
Sbjct: 145 EAYRPVRKGDLFLVRGGMRSVEFK 168
Score = 109 bits (262), Expect = 2e-24
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +3
Query: 27 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 206
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 207 RKETVCIVLSDDNCPDRK 260
RK+TVCI L+D+ C + K
Sbjct: 68 RKDTVCIALADETCEEPK 85
Score = 91.9 bits (218), Expect = 4e-19
Identities = 39/67 (58%), Positives = 54/67 (80%)
Frame = +1
Query: 481 GGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQ 660
GG +++ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+AQ
Sbjct: 160 GGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDEVGYDDVGGVRKQMAQ 218
Query: 661 IKEMVEV 681
I+E+VE+
Sbjct: 219 IRELVEL 225
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 122 bits (295), Expect = 2e-28
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +2
Query: 257 KIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFM 436
KIRM DV+S+ CP VKYGKRVHILP+DD+VEG+TGNLF+ YLKPYF+
Sbjct: 85 KIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFL 144
Query: 437 EAYRPIHRDDTFMVRGGMRAVEFK 508
EAYRP+ + D F+VRGGMR+VEFK
Sbjct: 145 EAYRPVRKGDLFLVRGGMRSVEFK 168
Score = 112 bits (269), Expect = 3e-25
Identities = 50/78 (64%), Positives = 65/78 (83%)
Frame = +3
Query: 27 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 206
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 207 RKETVCIVLSDDNCPDRK 260
RK+TVCI L+D+ C + K
Sbjct: 68 RKDTVCIALADETCEEPK 85
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/67 (58%), Positives = 54/67 (80%)
Frame = +1
Query: 481 GGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQ 660
GG +++ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+AQ
Sbjct: 160 GGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDDVGYDDVGGVRKQMAQ 218
Query: 661 IKEMVEV 681
I+E+VE+
Sbjct: 219 IRELVEL 225
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 117 bits (281), Expect = 9e-27
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +2
Query: 257 KIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFM 436
KIRM DV+S+ CP VKYG RVHILP+DD++EG++GN+F+ YLKPYF+
Sbjct: 86 KIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDTIEGVSGNIFDAYLKPYFL 145
Query: 437 EAYRPIHRDDTFMVRGGMRAVEFK 508
EAYRP+ + D F+VRGGMR++EFK
Sbjct: 146 EAYRPVRKGDLFLVRGGMRSIEFK 169
Score = 99 bits (238), Expect = 1e-21
Identities = 46/79 (58%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Frame = +3
Query: 27 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 203
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 204 RRKETVCIVLSDDNCPDRK 260
+RK+TVCI L+D+ C + K
Sbjct: 68 KRKDTVCIALADETCDEPK 86
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/67 (59%), Positives = 54/67 (80%)
Frame = +1
Query: 481 GGHARRRVQMVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQ 660
GG +++ETDP+ +C+VAPDT I C+GEPIKRE+EE L+ VGYDD+GG RKQ+AQ
Sbjct: 161 GGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEER-LDEVGYDDVGGVRKQMAQ 219
Query: 661 IKEMVEV 681
I+E+VE+
Sbjct: 220 IRELVEL 226
>At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 277 DTVHPNFLSGQLSSESTMQTVSLRRLP 197
+T HPNF+ G + E MQTV R+P
Sbjct: 508 NTSHPNFIGGTKAVEQAMQTVKSSRIP 534
>At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 277 DTVHPNFLSGQLSSESTMQTVSLRRLP 197
+T HPNF+ G + E MQTV R+P
Sbjct: 508 NTSHPNFIGGTKAVEQAMQTVKSSRIP 534
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = +1
Query: 622 YDDIGGCRKQLAQIKEMVEV 681
Y DIGGC++Q+ +I+E+VE+
Sbjct: 204 YSDIGGCKEQIEKIREVVEL 223
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 31.9 bits (69), Expect = 0.43
Identities = 10/22 (45%), Positives = 20/22 (90%)
Frame = +1
Query: 616 VGYDDIGGCRKQLAQIKEMVEV 681
V Y+D+GGC++Q+ +++E+VE+
Sbjct: 165 VTYNDVGGCKEQIEKMREVVEL 186
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.99
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 179 TTEELKLLHFGL*KCHD*VVIAD 111
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 616 VGYDDIGGCRKQLAQIKEMVEV 681
V Y+DIGGC Q +I+E VE+
Sbjct: 152 VSYNDIGGCDIQKQEIREAVEL 173
>At1g30750.1 68414.m03758 expressed protein
Length = 212
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +1
Query: 64 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANAARKPFAS 228
SS +P + S++ F++P + FN + + S S ++A +PF +
Sbjct: 115 SSTGLNNPILGQPSTSSSLNQPLTGFNQPSSTGFNQPISSSSSSSSSAQNQPFTN 169
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 22 KWQIIKVLMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 165
++ +I +L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
to dynamin like protein 2a (ADL2a) [Arabidopsis
thaliana] GI:19032337; supported by cDNA gi:19032336
Length = 808
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 277 DTVHPNFLSGQLSSESTMQTVSLRRLP 197
+T HPNF+ G + E+ M V R+P
Sbjct: 523 NTSHPNFIGGTKAVEAAMHQVKSSRIP 549
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 27.9 bits (59), Expect = 7.0
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +1
Query: 97 LSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANAARKPFASCSQMIIALIENSDEPC 276
L K + QS+ H +++NF SVV + KA A + F S S MII E+
Sbjct: 820 LYKVEPGACDQSFGIHVAEFANFPESVVALAREKA-AELEDF-SPSSMIINNEESGKRKS 877
Query: 277 REKQP 291
RE P
Sbjct: 878 REDDP 882
>At3g17450.1 68416.m02228 hAT dimerisation domain-containing protein
contains Pfam profile PF04937: Protein of unknown
function (DUF 659)
Length = 877
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 440 AYRPIHRDDTFMVRGGMRAVEFKWSKQIHH--HFASWLLIP*Y 562
A + IH DD R +E++W+ HH + A++ P Y
Sbjct: 618 AIKSIHSDDARKYGPFWRVIEYRWNPLFHHPLYVAAYFFNPAY 660
>At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synthase
4 / ACC synthase 4 (ACS4) identical to gi:940370
[GB:U23481]
Length = 474
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 326 ELWIPHQKDAHEGCFSRHGSSEFSIRAIII*EHDANGFLAAFA 198
E W+ DA CF R G S F A+ H + F AFA
Sbjct: 56 ESWLAQNTDA--ACFKRDGQSVFRELALFQDYHGLSSFKNAFA 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,234
Number of Sequences: 28952
Number of extensions: 323366
Number of successful extensions: 974
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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