Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0233.Seq
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.2  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   7.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.8  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 618 AGFALDNSVWYTHFTA*RWQEENQ 547
           AGF  +NS  Y       WQ++N+
Sbjct: 209 AGFTAENSPLYGGVNESDWQQQNR 232


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 440 TKEAQHHPIRHKHSHQA 490
           TK   HH I+ +H HQ+
Sbjct: 101 TKFNPHHEIKLQHLHQS 117


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 513 KWPSSSRPAW*LCLCRIGW 457
           K PS+ R AW  CL    W
Sbjct: 122 KLPSAERVAWMWCLIFAFW 140


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 513 KWPSSSRPAW*LCLCRIGW 457
           K PS+ R AW  CL    W
Sbjct: 122 KLPSAERVAWMWCLIFAFW 140


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 513 KWPSSSRPAW*LCLCRIGW 457
           K PS+ R AW  CL    W
Sbjct: 122 KLPSAERVAWMWCLIFAFW 140


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 513 KWPSSSRPAW*LCLCRIGW 457
           K PS+ R AW  CL    W
Sbjct: 122 KLPSAERVAWMWCLIFAFW 140


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 627 CPEAGFALDNSVW 589
           CP AG  +D+ VW
Sbjct: 532 CPFAGHPVDSVVW 544


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 231 LGPSYKSGQVTSWLNALTNSKVLWPLLE 148
           +  + K G   + + A  +S V+WPL+E
Sbjct: 211 INENLKMGLDIASITAQASSFVVWPLVE 238


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 231 LGPSYKSGQVTSWLNALTNSKVLWPLLE 148
           +  + K G   + + A  +S V+WPL+E
Sbjct: 211 INENLKMGLDIASITAQASSFVVWPLVE 238


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 433 SLHQRGPTPSDPAQTQSPS 489
           ++HQ+GP    P   Q P+
Sbjct: 197 NMHQQGPPHQQPPIQQQPN 215


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 433 SLHQRGPTPSDPAQTQSPS 489
           ++HQ+GP    P   Q P+
Sbjct: 199 NMHQQGPPHQQPPIQQQPN 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,413
Number of Sequences: 336
Number of extensions: 3286
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)