Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0233.Seq
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 83 4e-17
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 42 1e-04
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 37 0.002
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 4.6
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 4.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.0
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 8.0
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.0
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 8.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 83.0 bits (196), Expect = 4e-17
Identities = 37/57 (64%), Positives = 48/57 (84%)
Frame = +1
Query: 499 RRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLALTK 669
++ LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA+T+
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTE 202
Score = 68.5 bits (160), Expect = 9e-13
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKLYFSVV*KCP 285
NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ ++ K P
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72
Score = 59.7 bits (138), Expect = 4e-10
Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXX 434
+L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 64 ILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQ 123
Query: 435 XXXXRPNTIRSGTNTVTKLVEKKKA 509
+P ++ G N V L+E KKA
Sbjct: 124 DVSKKPYNVKYGLNHVVALIEAKKA 148
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
+V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 51 IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 LVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCT-CLALTKCG 675
LV++A D+ P++++ +P LC VPY K LG + K T C+ + G
Sbjct: 72 LVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGG 127
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 126 QENCESSLREEAKELCYWSGHSANS*LVQICKMAQVYPHPASEA-VLQRRLKVPPPINQF 302
Q+N ++S++E+A E S HS +S + P + + ++ +RL + PP++QF
Sbjct: 97 QQNSKNSIKEDANEHSVNSAHSKSS--------SNASPESLNPSQMMSKRLSL-PPMSQF 147
Query: 303 TQT 311
T +
Sbjct: 148 TDS 150
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 493 SRRRRPLVVIAHDVD 537
+++RRPLV+IA DVD
Sbjct: 272 AQQRRPLVIIAEDVD 286
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 480 LCLCRIGWC 454
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 605 LTIQYGTPILRHNAGRKRTSSIGST 531
LTIQ TP RH R +S++ ST
Sbjct: 268 LTIQPQTPRRRHKRSRHNSSNLAST 292
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 434 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 264
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 560 CQRYAVKWVYHTELSRANPA 619
C R AV +YH ++S NP+
Sbjct: 501 CPRLAVDPIYHMDVSNCNPS 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,913
Number of Sequences: 5004
Number of extensions: 50735
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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