Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0233.Seq
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 87 2e-17
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 86 2e-17
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 64 8e-11
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 43 3e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 42 5e-04
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 37 0.014
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 37 0.014
03_03_0006 - 13666961-13667755 29 3.6
07_03_1414 - 26403361-26403969 28 8.3
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 28 8.3
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 86.6 bits (205), Expect = 2e-17
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = +1
Query: 511 LVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLALT 666
LVVIAHDVDPIELV++LPALCRKM VPY IVKGK+RLG++VH+KT + L LT
Sbjct: 146 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLT 197
Score = 64.5 bits (150), Expect = 8e-11
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQK 255
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 60
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = +3
Query: 258 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 437
+L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 62 ILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTV 120
Query: 438 XXXRPNTIRSGTNTVTKLVEKKKA 509
+P ++ G N VT L+E+ KA
Sbjct: 121 EAKKPIVVKYGLNHVTYLIEQSKA 144
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/52 (75%), Positives = 47/52 (90%)
Frame = +1
Query: 511 LVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLALT 666
LVVIAHDVDPIELV++LPALCRKM +PY IVKGK+RLG++VH+KT + L LT
Sbjct: 131 LVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLT 182
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQK 255
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQR 61
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +3
Query: 258 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 368
VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 63 VLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 64.5 bits (150), Expect = 8e-11
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQK 255
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 44
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = +3
Query: 258 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 437
+L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 46 ILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTV 104
Query: 438 XXXRPNTIRSGTNTVTKLVEKKKA 509
+P ++ G N VT L+E+ KA
Sbjct: 105 EAKKPIVVKYGLNHVTYLIEQSKA 128
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +1
Query: 511 LVVIAHDVDPIELVLFLPALCRKMGV 588
LVVIAHDVDPIELV++LPALCRKM +
Sbjct: 130 LVVIAHDVDPIELVVWLPALCRKMEI 155
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 496 RRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRL--GALVHRKTCTCLALTK 669
R ++ L +IA ++ PI+++ +P LC + +PY V K L R TC L LTK
Sbjct: 58 RGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTK 117
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 496 RRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRL--GALVHRKTCTCLALTK 669
R + L VIA ++ PI+++ +P LC + +PY V K L R TC L +TK
Sbjct: 58 RGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTK 117
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>03_03_0006 - 13666961-13667755
Length = 264
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 455 HHPIRHKHSHQAGREEEGH 511
HH +RH+H H R GH
Sbjct: 100 HHRVRHRHRHHRDRGRRGH 118
>07_03_1414 - 26403361-26403969
Length = 202
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 246 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 109
L A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 77 LSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -3
Query: 587 TPILRHNAGRKRTSSIGSTS*AMTTSGLLLLDQLGDCVCAGSDGVGPLWWRLIFLGNLSF 408
+P+L +++ K + + + GLL QLG + G+D GP+ L F L F
Sbjct: 298 SPLLSNSSNLKTLNVRNNHLSGIIPDGLLSFQQLGVILLGGNDFHGPIPLDLCFNNYLHF 357
Query: 407 SSFPQPLFPG 378
F G
Sbjct: 358 VDLSNNQFSG 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,036
Number of Sequences: 37544
Number of extensions: 397325
Number of successful extensions: 1083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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