Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0233.Seq
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 1e-27
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 85 7e-17
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 42 5e-04
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 33 0.30
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0) 30 2.1
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 6.4
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 8.5
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 120 bits (289), Expect = 1e-27
Identities = 69/177 (38%), Positives = 88/177 (49%), Gaps = 1/177 (0%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKLYFSVV*KCPLRSTNLPRHWT 318
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK K P +
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 319 RLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSPSWSR 498
R + + P S
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 499 RRRPLVVI-AHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLALT 666
++ +V+ AHDVDPIE+V++LPALCRKM VPY IVKGK+RLG +VH+K T L +T
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCIT 205
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/86 (40%), Positives = 46/86 (53%)
Frame = +3
Query: 252 EAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXX 431
+++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 67 KSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKE 126
Query: 432 XXXXXRPNTIRSGTNTVTKLVEKKKA 509
+P ++ G N +T LVE KKA
Sbjct: 127 EAPGKKPMLVKYGINHITSLVENKKA 152
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 84.6 bits (200), Expect = 7e-17
Identities = 38/56 (67%), Positives = 47/56 (83%)
Frame = +1
Query: 499 RRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLALT 666
++ LVVIAHDVDPIE+V++LPALCRKM VPY IVKGK+RLG +VH+K T L +T
Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCIT 114
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +3
Query: 336 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKA 509
LFK+L KYRPET +P ++ G N +T LVE KKA
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKA 61
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
+V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGK 612
V++A DV PI+++ +P +C +PY V K
Sbjct: 118 VILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 632 TSAPRRDLPLTIQYGTPI-LRHNAGRKRTSSIGSTS*AMTTSGLLLLDQLGDCV 474
T R LP T YG I +++ G++R+S IG T ++ G +L D GD +
Sbjct: 618 TMPSRVTLP-TDNYGNVIKMKNTGGKERSSGIGVTQ-SLKDKGTMLTDSSGDVI 669
>SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 655
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 632 TSAPRRDLPLTIQYGTPI-LRHNAGRKRTSSIGSTS*AMTTSGLLLLDQLGDCV 474
T R LP T YG I +++ G++R+S IG T ++ G +L D GD +
Sbjct: 520 TMPSRVTLP-TDNYGNVIKMKNTGGKERSSGIGVTQ-SLKDKGTMLTDSSGDVI 571
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 449 PLWWRLIFLGNLSFSSFPQPLFPG 378
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 662 RAKHVHVLRCTSAPRRDLPLT 600
R +H H+ RCTSAP P T
Sbjct: 74 RKRHFHLRRCTSAPEPSSPNT 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,926,784
Number of Sequences: 59808
Number of extensions: 410960
Number of successful extensions: 1020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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