Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0233.Seq
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 120 1e-27
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 76 2e-14
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 69 3e-12
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 69 3e-12
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 36 0.028
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.028
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 30 1.4
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 30 1.4
Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical pr... 29 3.2
AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box transcr... 29 3.2
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.5
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 28 7.5
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 9.9
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 9.9
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 9.9
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 120 bits (289), Expect = 1e-27
Identities = 71/176 (40%), Positives = 89/176 (50%), Gaps = 1/176 (0%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKLYFSVV*KCPLRSTNLPRHWT 318
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 319 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSPSWS 495
R AF + + +R T T +
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 496 RRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLAL 663
RR LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 205
Score = 77.4 bits (182), Expect = 9e-15
Identities = 37/85 (43%), Positives = 49/85 (57%)
Frame = +3
Query: 255 AVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXX 434
A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 69 AILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKE 128
Query: 435 XXXXRPNTIRSGTNTVTKLVEKKKA 509
RPNT+R G NT+T+LVE ++A
Sbjct: 129 EVTKRPNTVRHGVNTITRLVETRRA 153
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/55 (63%), Positives = 43/55 (78%)
Frame = +1
Query: 499 RRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLAL 663
RR LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL
Sbjct: 131 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 185
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQ 252
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 67
Score = 65.7 bits (153), Expect = 3e-11
Identities = 37/85 (43%), Positives = 49/85 (57%)
Frame = +3
Query: 255 AVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXX 434
A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 69 AILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES--------------------T 108
Query: 435 XXXXRPNTIRSGTNTVTKLVEKKKA 509
RPNT+R G NT+T+LVE ++A
Sbjct: 109 EVTKRPNTVRHGVNTITRLVETRRA 133
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQ 252
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 170
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3
Query: 255 AVLQRRLKVPPPINQFTQTLD 317
A+LQ+RLKVPP INQF LD
Sbjct: 172 AILQKRLKVPPTINQFRTALD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQ 252
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQ 170
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = +3
Query: 255 AVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 371
A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 172 AILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 511 LVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 496 RRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG-ALVHRK 642
R + + ++A +V PI++ +P +C + +PY + + +LG A+ HR+
Sbjct: 82 RNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRR 131
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 413 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 294
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 451 PTPSDPAQTQSPSWSRRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGAL 630
P+PS+P T P+ ++ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 631 VHRKTCT 651
+ K T
Sbjct: 508 QNHKFAT 514
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 451 PTPSDPAQTQSPSWSRRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGAL 630
P+PS+P T P+ ++ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 631 VHRKTCT 651
+ K T
Sbjct: 508 QNHKFAT 514
>Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical
protein T07C4.6 protein.
Length = 292
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 430 MSLHQRGPTPSDPAQTQSPSWSRRRRPLVVIAHDVDPIELVLF 558
+S +R P+ SD + +QSPS R P V + PI LF
Sbjct: 197 LSRKRRSPSYSDGSNSQSPSPKSRSPPEVAPLQSMPPINPFLF 239
>AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box
transcription factor TBX-9 protein.
Length = 292
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 430 MSLHQRGPTPSDPAQTQSPSWSRRRRPLVVIAHDVDPIELVLF 558
+S +R P+ SD + +QSPS R P V + PI LF
Sbjct: 197 LSRKRRSPSYSDGSNSQSPSPKSRSPPEVAPLQSMPPINPFLF 239
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 286 LRSTNLPRHWTRLQLRA 336
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 223 WPKYIRIQRQKLYFSVV*KCPLRSTNLPRHWTRLQLRAFSRFW 351
W K + +QR+++ S++ L T L R L AFSR W
Sbjct: 3722 WKKVLTLQRKRMAISLITASHLYKTELHR-GINFFLPAFSRLW 3763
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 482 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 351
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 482 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 351
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 482 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 351
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,797
Number of Sequences: 27780
Number of extensions: 300557
Number of successful extensions: 765
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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