Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0233.Seq
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 93 2e-19
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 89 4e-18
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 1e-04
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.011
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.011
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.011
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.015
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.0
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 6.9
At3g52220.1 68416.m05737 expressed protein 28 6.9
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At4g00231.1 68417.m00026 ataxin-related contains weak similarity... 27 9.2
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 9.2
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 92.7 bits (220), Expect = 2e-19
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +1
Query: 496 RRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLALT 666
+ + LVVIAHDVDPIELV++LPALCRKM VPY IVKGKSRLGA+VH+KT +CL LT
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLT 196
Score = 64.1 bits (149), Expect = 9e-11
Identities = 25/39 (64%), Positives = 32/39 (82%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQK 255
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 59
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = +3
Query: 258 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 437
+L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 61 ILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPS 119
Query: 438 XXXRPNTIRSGTNTVTKLVEKKKA 509
+P ++ G N VT L+E+ KA
Sbjct: 120 ESKKPIVVKYGLNHVTYLIEQNKA 143
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 88.6 bits (210), Expect = 4e-18
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = +1
Query: 496 RRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLGALVHRKTCTCLALT 666
+ + LVVIAHDVDPIELV++LPALCRKM VPY IVKGKSRLGA+VH+KT L LT
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLT 195
Score = 64.1 bits (149), Expect = 9e-11
Identities = 25/39 (64%), Positives = 32/39 (82%)
Frame = +1
Query: 139 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQK 255
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 58
Score = 63.3 bits (147), Expect = 2e-10
Identities = 35/84 (41%), Positives = 45/84 (53%)
Frame = +3
Query: 258 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 437
+L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 60 ILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPA 118
Query: 438 XXXRPNTIRSGTNTVTKLVEKKKA 509
+P ++ G N VT L+E+ KA
Sbjct: 119 ESKKPIVVKYGLNHVTYLIEQNKA 142
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 496 RRRRPLVVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRL--GALVHRKTCTCLALTK 669
R ++ L VIA ++ PI+++ LP LC + GVPY V K L R TC L + K
Sbjct: 64 RGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLK 123
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 514 VVIAHDVDPIELVLFLPALCRKMGVPY*IVKGKSRLG 624
+V+A D +P+E++L LP L VPY V K LG
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 464 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 306
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 503 LLLDQLGDCVCAGSDGVGPLWWRLI 429
+LLDQ D C G G GP W ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238
>At3g52220.1 68416.m05737 expressed protein
Length = 237
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -1
Query: 271 RR*STASDAGCGYTWAILQIWTSHELAECPDQ*QSSLASSRREDS 137
+R STA D G G A+ + A P + S+LASS++ED+
Sbjct: 109 KRGSTAEDLGAGNADAVWVHGLGYAKAPRPWEDPSTLASSQKEDA 153
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2
Query: 588 YTHFTA*RWQEENQLNRINIMSDDHKWPS 502
YTHF RW NQ +R+ MSD KW S
Sbjct: 361 YTHFYE-RWAF-NQSSRLKAMSDLEKWQS 387
>At4g00231.1 68417.m00026 ataxin-related contains weak similarity to
Ataxin-10 (Spinocerebellar ataxia type 10 protein)
(Brain protein E46 homolog) (Swiss-Prot:Q9UBB4) [Homo
sapiens]
Length = 475
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 129 ENCESSLREEAKELCYWSGHSANS*LVQICKMAQVYPHPASEAVLQRRLKV 281
E+C L E +K S ++ S L I ++ Q+ P+P+S L LKV
Sbjct: 24 EDCLKFLLESSKTDSGRSDLASKSILPSILRLLQLLPYPSSRHYLNLSLKV 74
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 425 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 330
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,327
Number of Sequences: 28952
Number of extensions: 294241
Number of successful extensions: 808
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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