Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0232.Seq
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 190 1e-49
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 183 2e-47
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 163 3e-41
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 152 4e-38
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 118 9e-28
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 51 2e-07
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 42 1e-04
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.40
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.93
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 3.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.8
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 6.6
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 8.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 8.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 190 bits (464), Expect = 1e-49
Identities = 97/167 (58%), Positives = 113/167 (67%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVFSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P +TIFDAKRLIGRKF+D VQ+DMKHWPF+V S GKP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSQA*TFSESSMNPXXXXXX 607
VL KM+ETAEAYLG V +AV+TVPAY + + K P
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIA 180
Query: 608 XXXXXXXXENENVLIFELGGGTFDVSILTIEDGIFEVKSTAGDTHLG 748
NVLIF+LGGGTFDVS+LTIE+GIFEVK+TAGDTHLG
Sbjct: 181 YGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG 227
Score = 112 bits (270), Expect = 4e-26
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPN 254
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPH 62
Score = 76.6 bits (180), Expect = 4e-15
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +1
Query: 511 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE 636
NDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE
Sbjct: 149 NDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGE 190
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 183 bits (446), Expect = 2e-47
Identities = 93/167 (55%), Positives = 111/167 (66%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVFSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P +TIFDAKRLIGR+F D VQ+DMKHWPF+V GKP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSQA*TFSESSMNPXXXXXX 607
VL KM+E+AEA+LG V +AV+TVPAY + + K P
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIA 180
Query: 608 XXXXXXXXENENVLIFELGGGTFDVSILTIEDGIFEVKSTAGDTHLG 748
NVLIF+LGGGTFDVS+LTIE+GIFEVK+TAGDTHLG
Sbjct: 181 YGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG 227
Score = 112 bits (270), Expect = 4e-26
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPN 254
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPH 62
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/42 (83%), Positives = 37/42 (88%)
Frame = +1
Query: 511 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE 636
NDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E
Sbjct: 149 NDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHE 190
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 163 bits (395), Expect = 3e-41
Identities = 83/167 (49%), Positives = 105/167 (62%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVFSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P++T+FDAKRLIGR++ED Q D+KHWPF+V + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSQA*TFSESSMNPXXXXXX 607
VLTKMKE +EA L K V+ AVITVPAY + K P
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIA 184
Query: 608 XXXXXXXXENENVLIFELGGGTFDVSILTIEDGIFEVKSTAGDTHLG 748
+ +NVLIF+LGGGTFDVS+L I+ G+FEV +TAGDTHLG
Sbjct: 185 YGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLG 231
Score = 100 bits (240), Expect = 2e-22
Identities = 47/63 (74%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 255 TQY 263
T +
Sbjct: 68 TVF 70
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 152 bits (369), Expect = 4e-38
Identities = 74/167 (44%), Positives = 112/167 (67%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVFSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P++TIFD KRLIGRKF++ T+ D+K +PF + +D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSQA*TFSESSMNPXXXXXX 607
+L+KMK+TAEAYLGK V +AV+TVPAY + + K + A +N
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATK-DAGTIAGLNVIRIVNEPTAAAI 212
Query: 608 XXXXXXXXENENVLIFELGGGTFDVSILTIEDGIFEVKSTAGDTHLG 748
+++++++LGGGTFDVS+L+I++G+FEV +T+GDTHLG
Sbjct: 213 AYGLDKTDTEKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLG 259
Score = 98.7 bits (235), Expect = 8e-22
Identities = 45/64 (70%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-NT 257
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 258 QYSM 269
+ +
Sbjct: 98 IFDI 101
Score = 74.9 bits (176), Expect = 1e-14
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = +1
Query: 511 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGT 630
ND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T
Sbjct: 182 NDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT 221
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 118 bits (284), Expect = 9e-28
Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVFSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P++T F KRLIGR+F++ VQ D+K P+++ + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSQA*TFSESSMNPXXXXXX 607
+L+KM+ETA YLGK V+NAV+TVPAY + Q A + ++
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYF-----NDSQRQATKAAGAIAGLNVLRVVNEPT 221
Query: 608 XXXXXXXXENEN---VLIFELGGGTFDVSILTIEDGIFEVKSTAGDTHLG 748
+ +N V +F+LGGGTFD+SIL + +G+FEV+ST GDTHLG
Sbjct: 222 AAALAYGLDKKNDAIVAVFDLGGGTFDISILELNNGVFEVRSTNGDTHLG 271
Score = 73.7 bits (173), Expect = 2e-14
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 245
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 246 NPNTQY 263
NP +
Sbjct: 109 NPENTF 114
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/38 (84%), Positives = 36/38 (94%)
Frame = +1
Query: 511 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK 624
NDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK
Sbjct: 195 NDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK 232
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +3
Query: 66 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 245
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 246 N 248
N
Sbjct: 63 N 63
Score = 47.2 bits (107), Expect = 2e-06
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Frame = +2
Query: 251 QHTIFDAKRLIGRKFEDATVQADMKHWPFEVFSD-GGKPKIKVAYKGEDKTFFPEEVSSM 427
++T+ KRL GR ++D ++ ++ ++ G KV Y E+ F ++ +
Sbjct: 65 RNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAA 124
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDK----PQKMQVPSQA*TFSESSMNPXX 595
TK+K AEA L +V + VI++PA+ ++ + + + ++++
Sbjct: 125 YFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALT 184
Query: 596 XXXXXXXXXXXXENENVLIFELGGGTFDVSILTIEDGIFEVKSTAGDTHLG 748
V I + G + VSI+ G F +KST D +LG
Sbjct: 185 YGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLG 235
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 514 DSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 621
D QR+A +A I+GLN LR++N+ AAA+ YG+ K
Sbjct: 154 DIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITK 189
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 248
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82
Score = 39.1 bits (87), Expect = 7e-04
Identities = 24/120 (20%), Positives = 51/120 (42%)
Frame = +2
Query: 389 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSQA*TF 568
++K E S L ++ E+AE +LG V V++VP Y + K +
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPV 193
Query: 569 SESSMNPXXXXXXXXXXXXXXENENVLIFELGGGTFDVSILTIEDGIFEVKSTAGDTHLG 748
+ +P ++ V++ G +VS+++++ G+ + ++ D +LG
Sbjct: 194 LQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHDENLG 253
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNT 257
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82
Query: 258 QYSMPNV 278
+S+ NV
Sbjct: 83 AHSIRNV 89
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRK-FEDATVQADMKHWPFEVFSDGGKPKIKVAYK-GEDKTFFPEEVS 421
P H+I + K L+ E VQ +P + + +++ +++ + EE+
Sbjct: 82 PAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEII 141
Query: 422 SMVLTKMKETAEAYLGKTVQNAVITVPAY 508
+M + AE + + + V+TVP +
Sbjct: 142 AMTMEHYISLAEEMAHEKITDLVLTVPPH 170
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.93
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 73 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 168
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 348 LNTSKGQCFMSACTVASSNLRPMRRLASNIVCWGSSPPGSWRHL 217
LN S+ + ++S V +RP + + +IV GS++H+
Sbjct: 1173 LNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 177 PSYVAFTDTERLIGDAAKNQVAMNPNTQYSMPNVSSDVSSKMLLC 311
P +A T ER++ AAK A+N Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 159 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 1
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 426 MELTSSGKKVLSSPLYAT--LILGLPPSLNTSK 334
++L S ++LSS L T LI GLP LNTSK
Sbjct: 726 LKLWLSFSEILSSVLINTKNLIDGLPKFLNTSK 758
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 222 AAKNQVAMNPNTQYSMPNVSSDVSSKML 305
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = -2
Query: 492 ITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLNTSKGQCFMSA 313
I++ T+L + S + +S+ + S +LSS + + + SL+T S+
Sbjct: 618 ISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSIST---IPISSSLSTYSSSVIPSS 674
Query: 312 CTVASSNLRPMRRLASNIVCWGSSPP 235
T+ SS+ + ++S+ V SS P
Sbjct: 675 STLVSSSSSLI--VSSSPVASSSSSP 698
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 666 AVPSTCPSLPSRMVSSR*NPPPATPTW 746
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,217
Number of Sequences: 5004
Number of extensions: 71909
Number of successful extensions: 257
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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