Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0230.Seq
         (316 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep: ...    38   0.043
UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus lu...    33   0.93 
UniRef50_Q4D9Q3 Cluster: Putative uncharacterized protein; n=2; ...    31   3.8  
UniRef50_A4WN11 Cluster: Putative uncharacterized protein; n=1; ...    31   5.0  

>UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep:
          Predicted protein - Nematostella vectensis
          Length = 79

 Score = 37.9 bits (84), Expect = 0.043
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = -2

Query: 63 FHQSRTKVRGSKAIRYRPSSN 1
          F   RTKVRGSK IRYRPSSN
Sbjct: 6  FRCQRTKVRGSKTIRYRPSSN 26


>UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus
          lucimarinus CCE9901|Rep: Predicted protein -
          Ostreococcus lucimarinus CCE9901
          Length = 72

 Score = 33.5 bits (73), Expect = 0.93
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -2

Query: 63 FHQSRTKVRGSKAIRYRPSSN 1
          FH  RTKV GSK IRY PS N
Sbjct: 6  FHCQRTKVGGSKMIRYHPSLN 26


>UniRef50_Q4D9Q3 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 576

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 190 VGFQNYEVMINRDKGXNWYCDVRGEILGSSQDEHQGKYLRKVFSSIK 50
           VG  +Y+V    D+G  WY D  GE L +     +GK +R  F   K
Sbjct: 531 VGLDDYDVWAATDEGKEWYNDYFGEHLAAC----RGKMVRNAFRHTK 573


>UniRef50_A4WN11 Cluster: Putative uncharacterized protein; n=1;
           Pyrobaculum arsenaticum DSM 13514|Rep: Putative
           uncharacterized protein - Pyrobaculum arsenaticum
           (strain DSM 13514 / JCM 11321)
          Length = 135

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +2

Query: 95  VLRRSKNFTSNVAIPIXPLIPINHYLVVLKTNKI*PRSYSIIPCTKYSSSIFSRFEHSNL 274
           ++RR  N   ++ +    L+  N  L+V+K  K     + +IPC+K    + +     N 
Sbjct: 1   MVRRESNKQLHIVMYRSKLVQ-NRCLIVIKNLKNDKNVFKVIPCSKIKIYLANLLRQKNF 59

Query: 275 FKVKL 289
            K+KL
Sbjct: 60  IKIKL 64


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 291,034,299
Number of Sequences: 1657284
Number of extensions: 4929892
Number of successful extensions: 10502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10502
length of database: 575,637,011
effective HSP length: 81
effective length of database: 441,397,007
effective search space used: 10152131161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)