Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0230.Seq
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   2.7  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   2.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   3.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    24   4.7  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    24   6.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    24   6.3  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    24   6.3  

>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 132 ATLEVKFLDRRKTNIRESICERCFHQSRTKVRGSKA 25
           A   +   D +KT+IR  +   CF  +  K  G KA
Sbjct: 406 AVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKA 441


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 200 PRSYSIIPCTKYSSSIFSRFEHSNLFKVKL 289
           P    I  C KY S+ +S   HS L  ++L
Sbjct: 232 PHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 166  MINRDKGXNWYCDVRGEILGSS 101
            MI+ D G +W  D+  + LGSS
Sbjct: 2142 MISIDNGTSWSADIGFDTLGSS 2163


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 133 NTNSAPYPY*SLPR-SSENQQNITEI-IFYYSMHE 231
           + NS+ YP+ S PR SS++Q+  T   + YY + E
Sbjct: 133 DVNSSHYPHISRPRTSSDSQKMYTRAPVDYYYIQE 167


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 207 HILLFHARNIQAAFLAALSTLICSK*NYQPT 299
           +++LF+  +  + FL  +  ++C K   +PT
Sbjct: 603 YVILFYEPDFDSIFLRRVLIILCKKLQEEPT 633


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 212 NMISVIFCWFSELRGND 162
           N +S++ C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -2

Query: 93  NIRES-ICERCFHQSRTKVRGSKA--IRY 16
           N RE+ IC  CFH +     G KA  +RY
Sbjct: 194 NNREALICSHCFHHNGLASYGEKASDVRY 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,020
Number of Sequences: 5004
Number of extensions: 22877
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)