Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0230.Seq
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   1.8  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    27   3.1  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    27   3.1  
06_01_0782 - 5848381-5849394,5851143-5851255,5851337-5851440,585...    26   5.4  
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016...    26   7.1  
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15...    25   9.4  

>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 158 INHYLVVLKTNKI*PRSYSIIPCTKYSSSIFSRFE 262
           I H L +LK  KI P   +I  C +YS    S F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +2

Query: 155 PINHYLVVLKTNKI*PRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTH 310
           P  H+L     N     +    P   YSS+I   F H+N F   +   L TH
Sbjct: 58  PGPHFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 114 FLDRRKTNIRESICERCFHQSRTKVRGSKAIRY 16
           +++    N + SIC RC H S  K +  K   Y
Sbjct: 561 YVEVENGNDKSSICGRCHHLSSAKAKYQKRFSY 593


>06_01_0782 -
           5848381-5849394,5851143-5851255,5851337-5851440,
           5851584-5851660,5851740-5852132,5852267-5852482,
           5852826-5852923,5853503-5853637,5853745-5853811,
           5853999-5854094,5854555-5854683
          Length = 813

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 60  ENTFRKYFP*CSSCDDPRISP 122
           + T+R  FP  S  DDPR++P
Sbjct: 708 DRTWRFVFPETSGLDDPRVNP 728


>10_08_0493 +
           18299885-18299892,18300201-18300837,18301254-18301676,
           18301769-18302014,18302124-18302789,18303228-18303283,
           18303367-18303460,18303559-18303738
          Length = 769

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 16  VSNRLRTSNFR---S*LMKTPFAN-TFPDVRLATIQEFHL*RRNTNSAPY 153
           +++RLRT   R   S    TPFA    P V +   +EF L  R+ NS PY
Sbjct: 453 IASRLRTRTLRDGSSSNNPTPFAPFDGPPVDILPNREFMLYGRSANSPPY 502


>11_01_0022 +
           151233-151515,152632-152852,153579-153656,154558-154674,
           155970-156316,156504-157032
          Length = 524

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 199 LYFVGFQNYEVMINRDKGXNWYCDVRGE-ILGSSQDEHQGKY 77
           LYFV F+     +N D    W+   + E I+ S  + HQ  Y
Sbjct: 301 LYFVAFRPLAPGVNPDSANGWFHFKQAEPIIPSFLNSHQINY 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,549,617
Number of Sequences: 37544
Number of extensions: 123392
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)